KEGG   Methanosarcina sp. WH1: MSWH1_1062
Entry
MSWH1_1062        CDS       T03851                                 
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
mef  Methanosarcina sp. WH1
Pathway
mef03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mef00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSWH1_1062
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mef03019]
    MSWH1_1062
   03009 Ribosome biogenesis [BR:mef03009]
    MSWH1_1062
Enzymes [BR:mef01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     MSWH1_1062
Messenger RNA biogenesis [BR:mef03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     MSWH1_1062
Ribosome biogenesis [BR:mef03009]
 Prokaryotic type
  rRNA helicases
   MSWH1_1062
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 ERCC3_RAD25_C CMS1 AAA_22 P-loop_SecA Flavi_DEAD
Other DBs
NCBI-ProteinID: AKB21333
UniProt: A0A0E3KWX0
Position
1256301..1257509
AA seq 402 aa
MNNFKKLGLSNAVLKSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSFASGI
LQNSEKGKGIQALILTPTRELAEQVANSFRKFSKYDPLNIASIYGGVGINPQIKELKNAE
VVVGTPGRLLDHISRNTIKLNNVKTLVIDEADHMFDLGFKVDVEKIIKECPQNRQTLLFS
ATITKDIVQLSRKYMKNPVRVSLESYIDPQKLNQVVYKVQDDMKLSLLVYLLQNEKSNLG
MVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRIMEKFHSGNIGVLVCTDVAGRG
LDIKGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVLKDNDVNI
KEQVLPALKKIAIVRPEIRLPKPVNRMNNPSRKGQKSRHKNY
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgaataattttaaaaaactaggtctcagtaatgctgttttgaaatcaatagatgaacat
ggctttgaaagccctacagcaatacaggaaaaatcaattcccctaatacttgctggggaa
gatgttataggtggagccgcaacaggttccggaaaaacactctcgtttgcttccggcata
ttgcaaaattccgaaaaaggaaaaggaattcaggctttgatcctgaccccaacaagagaa
ctggcggagcaggtggcaaattctttcaggaaattctcaaaatacgacccgttaaatatc
gcatctatctatggcggtgtagggatcaatccacaaattaaagaattaaaaaatgccgag
gttgttgtggggacgcccggtaggctactcgatcatatcagcagaaataccatcaaactc
aataatgtgaaaacccttgtcattgatgaggcagaccatatgtttgatctgggattcaaa
gtagatgtagaaaaaattatcaaggaatgtcctcaaaacaggcagacccttttgttctct
gcgaccattacaaaagatattgtccagctttcccgcaagtacatgaaaaaccctgttcga
gtatcattagaatcttatatcgacccgcaaaaattgaatcaggtcgtttataaagtacag
gatgacatgaagttatctctgctcgtgtaccttctacaaaatgagaagtcaaacctcggg
atggttttctgcaacacaaaaagaaacactgacaaagtcgcgaaaaacctgaggaaatca
agtatcaatgccgtggcgattcatggcggattgacacagaacgaacgaactcgcataatg
gaaaagttccattccgggaacataggtgtccttgtatgcacagatgtagccggaagagga
cttgatataaagggtgtttcccatgtttacaattatgatattcccagggagagtaaacag
tatattcacaggattggaagaaccgcacgagcaggaacagaaggaaaagcgataaatatc
ctttctaaaaatgaccatgctaatttcatgagtgtgctgaaagacaatgatgtgaatatt
aaggaacaggtactacctgctctgaagaaaattgcaattgtaagaccagaaataagattg
ccaaagccggtaaatcggatgaacaacccctccagaaaaggtcagaaatccaggcacaaa
aactattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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