KEGG   Manihot esculenta (cassava): 110613445
Entry
110613445         CDS       T05761                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110613445
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mesc03041]
    110613445
   03009 Ribosome biogenesis [BR:mesc03009]
    110613445
Enzymes [BR:mesc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110613445
Spliceosome [BR:mesc03041]
 Complex A
  U2 snRNP components
   U2 related factors
    110613445
 Complex B
    110613445
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    110613445
Ribosome biogenesis [BR:mesc03009]
 Eukaryotic type
  90S particles
   Helicases
    110613445
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C DEAD AAA_22 AAA_19 nSTAND3 ABC_tran ResIII SRP54 FtsK_SpoIIIE Flavi_DEAD AAA_30 PhoH AAA_33 T2SSE TsaE AAA_7
Other DBs
NCBI-GeneID: 110613445
NCBI-ProteinID: XP_021610268
Position
1:39506769..39511296
AA seq 731 aa
MGTERKRKVSLFDVVDETSISAKISKMNGAGGAAMNNNGNNNNLINRWTGKPYSQRYYEI
LEKRRTLPVWHQREEFLTALKKNQVLVLVGETGSGKTTQIPQFVLEAVDIETPDKRRKMM
IGCTQPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRNDLKLVVMSATLEAEKFQGYFNDA
PLMRVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRK
ITKEVGNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPLPLTEGGPAGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFNQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYLG
ALDDDGNLTMLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDSSWCYENFVNHRALKAADNVRQQLVRI
MARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYSEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPNCEAKRVLEKLYRKR
EREKEENKNRK
NT seq 2196 nt   +upstreamnt  +downstreamnt
atgggtacggagaggaagagaaaagtgagcttgtttgatgtggtggacgagacttcgata
tcggcgaagatatcgaaaatgaacggcgctggtggagcggcgatgaataacaacggaaac
aataacaatttgataaatcggtggactgggaagccttattcacagaggtactatgaaatc
ttagaaaagaggaggactctgcctgtttggcaccaaagagaggagttcttgacggctttg
aagaaaaatcaggtccttgttcttgtcggtgagactggtagtggaaaaactactcagatt
cctcagtttgtcttggaagctgttgacatagaaacacctgacaaacgtaggaagatgatg
attggatgcacacagcctcgtagagtggctgcaatgtctgtttctcgacgtgtggcggaa
gagatggatgtgaatattggtgaagaagtcggttatagcatccgttttgaggattgtagc
agcgcaagaacagttttgaagtatttaactgatggtatgcttttaagagaagcaatgact
gatccacttttggaacgatacaaagttataattcttgatgaagctcatgaaagaactttg
gcaacagatgtattatttggactacttaaagaagttctaagaaatagaaatgatctgaag
ctagttgtgatgagtgcaacactagaggctgagaagtttcagggttattttaatgatgca
cctctgatgagggttcctggtagacttcatccagtggagattttctatacccaggaacct
gagagggattaccttgaggcagcaattcgtacagttgttcagatacatatgtacgaaact
cctggggacatactcgttttcctcacaggtgaggaggagatagaagatgcgtgccggaaa
ataacaaaggaggttggaaatatgggggaccaggtgggtccagtgaaggtagtgcctcta
tattctactcttccacctgccatgcagcagaaaatttttgagcctgctccactcccattg
actgaaggaggccctgctggaaggaagatagtagtttcaactaacatagcagaaacttct
ttgaccatagatggcattgtttatgttatcgacccagggtttgctaagcaaaaggtttac
aatcctcgagtgcgtgttgaatccttgttggtttccccaatatcaaaagcaagtgctcat
caaaggtctggccgtgctggaagaactcagccaggcaaatgcttcagactttatacagag
aaaagttttaatcaagatcttcagccacagacatatccagaaatactgcgatcgaaccta
gcaaatacagttctgacactgaagaaacttggaattgatgatttagtgcattttgatttt
atggacccgcctgctccagagacattgatgcgggcactagagatgctgaattacttggga
gcattggatgatgatgggaacttgacaatgcttggagaaatcatgagtgagtttcctttg
gatccacaaatgggaaagatgctggtggtcagtcctgaattcaactgctcaaatgagatc
ttgtcaatctctgcgatgctttcagtacccaattgctttgtccgccctagggaggctcaa
aaggctgctgatgaagcaaaagctaggtttgggcatattgatggggatcacctgacgctg
ttgaatgtgtatcatgcatacaagcagaacaatgaggattcatcttggtgctatgaaaat
tttgtcaaccatcgggctctcaaggctgctgataacgtgagacagcagcttgtacgcatc
atggcaaggtttaaccttaagttatgcagcacagacttcaacagccgtgactactatgtc
aacataagaaaggctatgctagctggatattttatgcaggtggcccacctagaacgcact
gggcactacctgacagtgaaagacaatcaagtggtgcatttacatccttcgaactgtctg
gatcacaagccggagtgggttatttatagtgagtatgtcctgacaagccggaattttatt
cgaacggtgacagatattcgtggtgaatggctagtagacatagcaccacactactatgat
ttagccaacttcccaaattgtgaggccaagcgagttctggagaagctttatcggaagcgg
gagagagagaaggaagagaacaagaacagaaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (19)   
   Pfam (19)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system