KEGG   Mycolicibacterium goodii: AFA91_15310
Entry
AFA91_15310       CDS       T04008                                 
Name
(GenBank) cold-shock protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
mgo  Mycolicibacterium goodii
Pathway
mgo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mgo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AFA91_15310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mgo03019]
    AFA91_15310
   03009 Ribosome biogenesis [BR:mgo03009]
    AFA91_15310
Enzymes [BR:mgo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AFA91_15310
Messenger RNA biogenesis [BR:mgo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AFA91_15310
Ribosome biogenesis [BR:mgo03009]
 Prokaryotic type
  rRNA helicases
   AFA91_15310
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII UvrA_inter CMS1 HEM4 P-loop_SecA AAA_19 adh_short Flavi_DEAD
Other DBs
NCBI-ProteinID: AKS33042
UniProt: A0A0K0X6M9
Position
3236950..3238674
AA seq 574 aa
MTSQEPDPSPVTNSDPAPTEPTFADLQIHPAVLQAVTDVGYESPSPIQAATIPAMLAGSD
VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGAHLPQVN
VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG
FAEEVERILADTPEYKQVALFSATMPSAIRKITTKYLHDPVEVTVKAKTATAENISQRFI
QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE
RTIAALKDGAIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA
VLFVTPRERHLLKSIEKATRSKLVEAELPSVEDVNAQRVAKFRDSIGDSLNAPGIDLFRR
LIEDYERESNVPLADIAAALAVQTRNGEEFLMTEPPPDKRRDRDRDRDERGPRKERPPRE
GLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVELPEKLPKKTLKA
LENTRISGVLINLQPDRGPRREGSGKYKSNRKVK
NT seq 1725 nt   +upstreamnt  +downstreamnt
atgacctcgcaagaaccggatccgagtccggtgaccaactcggacccggcccctactgaa
ccgacctttgccgacctgcagattcaccccgccgtgctgcaggcggtcaccgacgtcggc
tacgaatcgccctctccgatccaggccgcgaccatcccggcgatgctggccggctccgac
gtcgtgggcctggcccagaccggcaccggcaagaccgcggcgttcgcgatcccgatcctg
tccaagatcgacacctcccgcagggacacccaggcgctcgtgctggccccgacccgtgag
ctcgcgctgcaggtcgccgaggccttcggccgctacggcgcgcacctgccccaggtcaac
gtgctgccgatctacggcggatcgtcctacaccgtgcagttgtccggcctgcgccgcggt
gcgcaggtggtggtcggcaccccgggccgcgtgatcgaccacctcgagcgcggcacgctg
gacctgtcgaagctggactacctggtgctcgacgaggccgacgagatgctcaccatgggc
ttcgccgaggaggtggagcggatcctcgccgacacccccgagtacaagcaggtcgcgctg
ttctcggcgaccatgccgtcggcgatccgcaagatcaccaccaagtacctgcacgacccg
gtcgaggtcacggtcaaggcgaaaaccgcaacggccgagaacatttcgcaacggttcatc
caggtggcaggcccgcgcaagatggacgcgctgacccggatcctggaggtcgaggagggc
gacgcgatgatcgtgttcgtccgcaccaagcaggccaccgaggaggtcgccgaccggctc
aaggcccgcgggttcgccgcggcggccatcaacggcgacatcaaccaggcccagcgcgaa
cgcaccatcgccgcgctcaaggacggcgcgatcgacatcctcatcgcgaccgacgtggcc
gcgcgtggtctggacgtcgagcggatctcgcacgtcatcaactacgacatcccgcacgac
accgagtcctatgtgcaccggatcggccgcaccggccgggccggccgctcgggtcacgcg
gtgctgttcgtgacgccgcgtgagcggcacctgctcaagtcgatcgagaaggccacccgc
tccaagctcgtcgaggccgaactgcccagcgtcgaggacgtcaacgcgcagcgcgtcgcg
aagttccgcgactcgatcggcgattcgctcaacgcaccgggcatcgatctgttccgtcgt
ctcatcgaggactacgagcgcgaatccaatgtgccgctggccgacatcgcggccgcgctc
gcggtgcagacgcgcaacggcgaagagttcctcatgaccgaaccgccgccggacaagcgg
cgcgaccgggaccgcgaccgcgacgagcgcggcccgcgcaaggagcgtccgccgcgcgag
ggtctggcgacctaccgcatcgacgtgggcaaacgccacaaggtcggtccggggcacatc
gtgggcgccatcgccaacgagggcgggttgcaccgcaacgagttcggccacatcaccatc
cggctcgactattcgctggtggagttgcccgagaagcttccgaagaagacgctcaaagcg
cttgagaacacccgcatctccggggtgttgatcaatttgcagcccgaccggggaccgcga
cgggaaggatcgggcaagtacaagtccaaccggaaggtgaagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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