KEGG   Methanosphaera stadtmanae: Msp_1228
Entry
Msp_1228          CDS       T00313                                 
Name
(GenBank) predicted helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
mst  Methanosphaera stadtmanae
Pathway
mst03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mst00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Msp_1228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mst03019]
    Msp_1228
   03009 Ribosome biogenesis [BR:mst03009]
    Msp_1228
Enzymes [BR:mst01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Msp_1228
Messenger RNA biogenesis [BR:mst03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Msp_1228
Ribosome biogenesis [BR:mst03009]
 Prokaryotic type
  rRNA helicases
   Msp_1228
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 Flavi_DEAD
Other DBs
NCBI-ProteinID: ABC57606
UniProt: Q2NEZ7
Position
1398810..1400561
AA seq 583 aa
MEKLKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGI
PLLENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKAL
QKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQ
FLLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDL
HDFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVAT
DVAARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQR
YAKTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVEEDYNSIDIAA
TLLKGVIDDKRYKEEEFGDTEAHEGFVRFFMSVGRKQNITISVILNSIYEKTGLTGHQIG
NIDIFDNFSFVEIPKANASDFYRFMGDTYIENKRAHIEPARPRDKSKKNNTRNNNRNFNK
KRGRKSKKFNPHRNDYHQKDSYRKDTYRKESKFRKDNYGNESY
NT seq 1752 nt   +upstreamnt  +downstreamnt
atggaaaaattaaaatttaaagacttaaatatatctcccgaaatacaaaaagcagttgca
gatatgggttttgaagaagcatcacctattcaatcattagcaatacctcaaatattagcc
cataaagatgttactggtcaagctcaaactggaactggtaaaactgctgcatttggaata
ccattacttgaaaatatagatagtgaagataataatttacaagcaattattttatgtcct
acacgtgaattagcaatacaagtagcagaagaattaagaaaattatctgtttaccttcct
aaaatagatgtacttccagtttatggtggtcaaccaatagatagacaaattaaagcatta
caaaaaggtgttcaaataataataggtacaccaggacgtgtaatggatcatattgatagg
ggaactttaagtttaaataacattaaaacagtaatcttagatgaagctgatgaaatgtta
gatatgggttttagagaagatattgaatatattttagaagatatcccatatgaaagacaa
ttcctattattctctgcaacattacctcaagaaatacttcaattagcacagagataccag
acaaatccagagattgttaaggttacaaaacatgaattaacaacacctgatgttgaacag
aaatattttgaagttaaagaagatatgaaacttgaactattatctagattattagattta
catgattttgatttatcattagtattttgtaatacaaaaagaaaagttgataaacttgta
agtcaccttcaaataagaggataccttgcagatggattacatggcgatcttacacaaaat
caaagagatcgagtaatgagtaaatttaaaaagggaaatatcgaaatattggttgcaaca
gatgttgctgctagaggtattgatgttggtggtgttgaagcagtatttaactttgatata
ccaaatgataatgaatattatgttcatagaataggacgtactggaagagctggaaaaact
ggaaaagcatacagtttcgtatctggacgtgaaatatatcaactaagagatattcaaaga
tatgctaaaactaaaatagaacaagcacctattcctgcccttagtgatgttgaagaagtt
aaaaaagataacttcattgaagaattaaaagaaaaaattaatactgaagatatttccaaa
gaaacatacataattgaaaaattagttgaagaagactataactcaatagatattgctgct
actttacttaaaggagtaattgatgataaacgttataaagaagaagaatttggagatact
gaagctcatgaaggatttgtacgtttctttatgagtgttggtagaaaacaaaacattaca
attagtgtaatattaaattccatctatgaaaaaactggacttacaggtcatcaaataggt
aacattgacatatttgataatttttcatttgtagaaattccaaaggctaatgcttcagat
ttctatagatttatgggtgatacctatatagaaaataaacgtgcacatatagaacctgca
cgacctagagataaatctaagaaaaacaatacccgaaataacaataggaattttaataaa
aaacgaggacgtaaaagtaaaaaatttaatccacatagaaatgattatcatcaaaaagat
agttatagaaaggatacttatcgaaaagaaagtaaatttagaaaagataattatggaaat
gaatcatattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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