KEGG   Mannheimia varigena USDA-ARS-USMARC-1388: X875_9040
Entry
X875_9040         CDS       T03029                                 
Name
(GenBank) ATP-dependent RNA helicase rhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
mve  Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mve00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X875_9040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mve03019]
    X875_9040
Enzymes [BR:mve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     X875_9040
Messenger RNA biogenesis [BR:mve03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     X875_9040
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 CMS1 DKCLD
Other DBs
NCBI-ProteinID: AHG79522
Position
937378..938619
AA seq 413 aa
MSNHLTEHRFIDFPIHVNILNALDSKGFEFCTPIQAKTFPITLYGNDIAGQAQTGTGKTL
AFLVATFNHLLNNEVETAKNQPRALILAPTRELAVQIGADAQLFLQHSDLKLALAYGGDG
YDKQLQEIEKGVDILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLM
RKCPKPQDRLTLLFSATLSPKVRELAYEDMDNAEYIEIEPLQRTGHRIKEELFYPSNEDK
MALLLTLLEEEWPDRCMIFANTKHKCEEIWQYLLADGHRVGMLTGDIAQKKRLSLLDNFT
KGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSISFACER
YAVNLPAIEEYIGHQIPVSQYDKESLLDVPKVNRPRGKNPFVAKKNNRNGVNK
NT seq 1242 nt   +upstreamnt  +downstreamnt
atgtcaaatcatcttactgaacatcgtttcattgatttcccgattcatgtcaatattctt
aatgcgttggacagcaagggctttgaattttgcactccaattcaagccaaaactttcccc
attacgctttatggaaatgatattgcagggcaagcccaaacaggaacggggaaaacgcta
gcatttttggtggcgactttcaaccatttactgaataacgaagttgaaacagcgaaaaat
cagccaagagcattaattttagccccaactcgtgaattggcggtgcaaatcggggctgat
gctcagctctttttacagcattctgatctgaaactcgcccttgcctacggcggtgatggc
tacgataaacagctacaagaaatcgaaaaaggcgtggatattttagtcggcacaacaggt
cgggtgattgattatgtgaaacaaggcattatcaatttggataaagttcaagtggtagtg
cttgatgaggcggatcgaatgttcgatcttggcttcattaaggatattcgttacttaatg
cgtaaatgtccgaagccgcaagatcgcttaacgctactgttttccgccaccctttcgcca
aaagtgcgtgagctggcttacgaagatatggacaatgccgaatatatcgaaattgagccg
ttgcaacgcactggccatcgtattaaagaggagcttttctacccgtctaatgaagataaa
atggcgttattgctgacgttgttggaagaagagtggccggatcgctgtatgattttcgct
aacactaaacataaatgcgaggaaatttggcaatatttgttagcggacgggcatcgggtc
ggaatgctgactggtgatattgcgcagaaaaaacgcctttcattgctggataatttcacc
aaaggcaatttggatattttagtcgttacggatgtcgcagctcgtggtttgcatattcct
gatgtcacgcatgtcttcaattatgatctgcctgatgataaagaagattacgtccatcgt
attggtagaacggggcgagcaggggagagcgggcattcaatcagctttgcttgtgagcgt
tacgcggtaaatttaccagctattgaagagtatatcggacaccaaattccggttagccaa
tatgataaagaatctttacttgatgtgccgaaagtaaatcgtccaagaggtaaaaatcct
tttgtggcgaagaaaaataatcgtaatggtgttaataaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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