KEGG T03028: X874

Mannheimia varigena USDA-ARS-USMARC-1312: X874_10170

Entry

X874_10170        CDS       T03028

Name

(GenBank) UvrABC system protein B

K03702

excinuclease ABC subunit B

Organism

mvg Mannheimia varigena USDA-ARS-USMARC-1312

Pathway

mvg03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:mvg00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    X874_10170
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mvg03400]
    X874_10170
DNA repair and recombination proteins [BR:mvg03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     X874_10170
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      X874_10170

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 DUF5683 DUF87

Other DBs

NCBI-ProteinID:

AHG77653

Position

complement(1097166..1099184)

AA seq 672 aa
MSKQHKPFILHSPFKPSGDQPTAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAELN
RPAMVLAPNKTLAAQLYAEMKGFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINE
QIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAMIGQRDILSRLA
ELQYTRNEQAFQRSTFRVRGDVIDIYPAESDEVALRVELFDDEIENLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILDAIEQIKEELAERRTYFIQENKLLEEQRIAQRTQFDIEMM
NELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRAR
KETLVQYGFRLPSALDNRPLKFEEFERLSPQTIYVSATPGIYELEKNPDVVDQVVRPTGL
LDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS
DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT
IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQMKYNEENGIVPQALNKKVGELLD
IGQSDKPKRGKQAVKKAENSASDYKPKSRKELGKELKTLEQQMRDFAKDLEFEKAAAVRD
KIGQLKAYLLEV

NT seq 2019 nt +upstreamnt +downstreamnt
atgagcaaacagcacaaaccctttattctccattctccattcaaaccctcaggcgatcag
ccaactgcaatcgccaagctcaccgaaggcttaaacgatggcttagctcatcaaacttta
ctcggcgtaacgggttcgggcaaaacctttacgattgcaaatgtgattgccgagctcaat
cgcccagcaatggtgcttgccccgaataaaacccttgccgctcagctttatgcggagatg
aaaggctttttccctgaaaatgcagtggagtatttcgtttcctactatgactactaccag
cccgaagcctatgtaccagcaagcgatacctttattgagaaagatgcgtccatcaatgaa
cagatcgaacagatgcgactgtcggcgactaaatctttcctcgaacgccgagataccatt
gtggtggcttctgtatctgccatttacggtttgggagatgttgatgcctatatgcagatg
atgttgcatttgcaagtgggggcgatgatagggcagcgagacattttaagccgccttgcg
gaattgcaatacacccgtaacgagcaggcgttccaacgctcaactttccgtgtgcggggc
gatgtgatcgacatttaccctgcggaaagcgatgaagtggcactgcgtgttgagctgttt
gacgatgaaatcgaaaacctctcgctgttcgacccactcacagggcatagtttaggcaaa
gtgcctcgctacacgatttacccgaaaacccactatgttaccccacgagaacgaatttta
gatgcaattgagcagatcaaagaagaacttgccgaacgccgtacctactttattcaagaa
aataaattgctggaagagcaacgcatcgcccaacgcacccaatttgatattgagatgatg
aacgagctaggttactgttcgggcattgaaaactactcacgctatctgtcggggagaaaa
gagggcgaagctccgccaactctatttgattatatgcctgccgacggtattttagtgatt
gatgaaagccacgttactgtgccacaaatcggcggaatgtatcgaggcgaccgagcgaga
aaagaaactttggtacagtatggcttccgtttgccgtctgctcttgacaaccgaccgttg
aaatttgaagagtttgaacgcctttcgccacagacaatttatgtgtcggcaacaccggga
atctatgaattagagaaaaatcccgatgttgtcgatcaggtcgttcgcccaacaggctta
ctcgacccaattatcgaagttcgcccagtcgccacacaagttgatgatttactgtcggaa
attcataaacgagtggcggtagacgagcgagtactggtaactacgctgaccaaaaaaatg
gcggaagatctgactgactatttagacgaacacggcgttcgggtgcgttatttacacagc
gacatcgacacggtagaacgggttgagatcatccacgatttacgaatgggaatgtttgat
gtgttggtggggattaacttgctgcgtgaaggcttggatatgccggaagtctcgcttgtg
gcaattcttgatgcggataaagagggtttcctccgctccgaacgctcgctaatccaaact
atcggacgagctgctcgaaacctcaacggcaaagctattttatacggcgaccgtattact
aactcaatgcagaaagcgattacggaaaccgaacgccgccgtgaaaaacagatgaaatac
aatgaagaaaacggcattgtgccacaagcgttgaacaaaaaagtgggcgagttgctcgac
atcggacaatccgacaaaccaaaacgaggcaaacaagcggtcaaaaaagccgaaaattct
gcaagtgactacaagccgaaatcccgcaaagaattgggaaaagagcttaaaacgctggaa
caacagatgcgtgattttgcgaaagatctggaatttgaaaaagcggctgcggtaagggat
aaaattgggcagttgaaggcgtatttattggaggtttaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (17)   

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