KEGG   Mizuhopecten yessoensis (Yesso scallop): 110450788
Entry
110450788         CDS       T05079                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:myi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110450788
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:myi03019]
    110450788
Messenger RNA biogenesis [BR:myi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110450788
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     110450788
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT TFIIA DUF6857 DUF4820 EOS1 EIF4E-T DDHD DUF2362 Lin-8
Other DBs
NCBI-GeneID: 110450788
NCBI-ProteinID: XP_021354169
Position
Unknown
AA seq 2454 aa
MNLDSLSFALAEISYSVSNLTKKNFKSSVGEISHLVLQHGAEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGTLLSKPNFVSTLCYAIDNPLHHQKCLRPSPHLFPQISRVLK
LTRVQEVVFGLALLNSSSSETRPLAVQFVKQKLPDLVRSYVDTVDTGLRQEGGLQDVDVE
ILHLLLNQIQSNKDNFGLGAEQREAFYRTLRKDFPHNRVPVILGPLLYPEAEDLAISKLS
DTTNMPKSVLDASLADMVLEAGYSCTISVEECRGKLLQFGIREITPASVAKVLGMMARTP
SGLSESGHNQAQMNAAPGSGWPDMGEKVDKLGVNTWNVEVFVSVVQDLVRQINLSAVKYD
KAPHFNWRDVVLQLDHSGFMVVNKKGLRLLVQGLIRGLQEVFPVEFVYRPWKNTEGQLSF
IKQALRNPDVFCFGDYPCHTVVIDILKAAPDDENRDIGTWKSLDLVETLLRLSEAGYYQQ
VSELFKFPIQNCPDMLVLALLQITPTWNTLKQELISTLMPIFLGNHPNSAVVLHYAWHCQ
GHSSTIRTLIMHSMAEWYMRGEQHDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACL
ASRREYLKLDKWLSDKIREHGEPFIQTSVNFLKRRCPQLMGGPAKDEQLPQAKSQMLPTD
TIATMLSCLQHCASQVSQELSEAILTMVANASMILNKARQAPPVPKSNLPPTLLNQPTSQ
SNLLDSLDNANTLGIPKSWGMSGVNSGFPQNLTSLSTTATPGSPAKGAGFQPISQPSGFG
AMQNITNQLQSLSMSNPMGVPPRNPSVNTLGTISSQAVIKQQQQQQVQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQLRAGGMSQVSGEMSTIFPDMSQQFTREVEDEANSYFQRIY
NQHPHPTMSIDEVLDMLKRFKDSPNRREKDVYECMLRNLFEEYRFFPQYPERELHITAVL
FGGIIEKGLATYMALGIALRYVLEALKKQLNSKMYYFGIAALDRFKTRLKDYPQYCQHLA
AIPHFQQFPQHLIEFVEYGARSQEPPVIPSISRTMTPTAVGGVSFTGTAPTVTPTPTSAA
ISSAEGPMPPVLAPAPAAAPTPAAVTTTTTATTTAVTTGTTKPSSLPKPSIASATNIDTL
LAGQGNEESSIPPESVQDKVFFIFNNLSLANMVQKAEELRKEITEDYYCWSAQYLVMKRA
SIEPNFHTLYANFLDALQIPDIAHMVIRETFRNIKVLLRSDKGDANFSDRTLLKNLGHWL
GMLTLAKNKPILQIDIDLKALLYEAYHKGARELLYVVPFTAKVLESCAKSKVFRPPNPWT
IGIMNVLAELHQEPDLKLNLKFEIEVLCKTLTLDLNELNPSTYLKDTSRISTTEPQLSNM
VKSMPPPPMPIPQPEQPLVQLTAPVPTPPVSTTSVASTVTTTTPNMPPRPQFAFDEVVTA
NLNSIGSHIVTSDQIPLFQGNPNLKQLVKIALEKSIQELLPPVVERTIKITLQTCEQIIK
KDFALDPEENRMRAAAHHMVRNMTAGLALITSREPLYLSINNNLKSAFMTTLRVNEGATQ
AQKEMIEQAAQLVAQENTELACVFIQKTAVEKAIPEIDKRLATEFDLRKHARSEGRRYCD
PVILTYQAERMPEQIRLKVGGVTAGQIAVYEEFAHNIPGFQPTNDPSLPPGVPKPVPTYS
IDDLTQILDRIRRDMEQYMQHLMGIPTSNPLVVQLHSLLEAVLLARNNREVVTSIALLQK
AVEGLLDHYTFSQLSTDQDLLVRFRDCNLMVLKSLQDQRAYGPQWTNKQVTRCLIEVGGD
NKYNADAVDCLIRSGLVSMQQYDLYLVQLMENGLNYVGVMFTMQLVQRYCVDDKANSPVT
EVDFANTIEALTQVNTRNQRPPEGLSQMLEGLHPPVDFGLLERAIGGPTSMMQSGISQAR
ELDDPPGLHEKTEFLLREWVNMYHSPAAGRDSTKAFTAFVQQMHQQGILKTDDLITRFFR
LCTEMCVDLCYRALGEQSQNPALVRAKCFHTLDAFVRLIALLIKHSGDTANTVTKINLLN
KVLGIVAGVLLQDHAVRQSEFQQLPYHRIFIMLFIELNAPEHILENINFQVLTAFCNTFH
VLRPAKAPGFAYAWLELLSHRVFIGRLLALTPQQKGWGMYAQLLLDLFKFLTPFLRNAEL
TKPTQLLYKGTLRVLLVLLHDFPEFLCDYHYAFCDVIPPNCIQMRNLILSAFPRNMRLPD
PFTPNLKVDMLADIAHPPRILTNFAKMIEPASFKKDLDSYLKTRSPVTFLSELRSNLQLN
EPGMRYNIPLMNALVLYVGTQSIQNIHSKGLTPSMSTIIHSAHMDIFQNLGVDLDTEGRY
LFLTSISNQLRYPNSHTYYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLI
TFIELIKNPQFKFWNHEFVHCAPEIEKLFESVARSCMQPKTGQSLREAETNEIH
NT seq 7365 nt   +upstreamnt  +downstreamnt
atgaatcttgactcgttatcatttgccttggcagaaataagctattctgtgtccaattta
acaaagaagaatttcaaatcgagcgttggagaaataagtcatcttgttctgcaacacgga
gctgaagcagataggcacttattccggtgccttttctcacatgtagacttcagcggtgat
ggtagaagtagcggaaaagactttcaccagacacagtttctgatacaggagtttgggact
ctgctgagcaaaccaaattttgtgtcaactttgtgttacgccatcgacaatccattacat
catcagaagtgtttacgtccatcaccacacctcttcccacaaattagtcgggtcctgaag
ctgacccgcgtacaggaagttgtgtttggattagcattactaaactcttcaagctccgag
actcgaccccttgccgtacagttcgtcaaacagaaactaccagatcttgtcagatcttat
gttgatacagtagacacaggattgcgtcaggaaggcggtctgcaggacgtggacgttgag
atactccaccttctgctcaaccagatccagagtaacaaggacaactttggacttggtgca
gaacaaagggaagctttctacagaacactcaggaaagactttcctcacaaccgtgtccct
gtcatattaggaccgttgctttaccctgaggcagaggatctagctatttcaaagctctcg
gacactacaaacatgccgaaatctgtgctggatgcgtcgctggcggacatggttctggag
gctggatacagctgcaccattagtgtggaagaatgtcgtgggaagctcctccagtttggc
ataagggagataactccagcatctgtggccaaagtgttggggatgatggcaagaacacca
tcagggctgtcagaatcggggcacaaccaggcccagatgaatgctgcaccaggcagtggc
tggcctgacatgggggagaaggtagacaagcttggtgtgaacacttggaatgttgaggtg
ttcgtcagcgtcgttcaggatctggtaaggcagattaatctgtctgctgtaaaatatgac
aaggcgccccacttcaactggagagatgtagtgctacagcttgatcactcagggttcatg
gttgtcaacaagaaaggactgcggctgctggtgcagggactgatccgaggactacaggaa
gtgtttcctgtcgagtttgtatatcgaccatggaaaaacacagagggacagttgtcgttc
atcaagcaagcgctgcgtaacccagatgtgttctgttttggagattacccttgtcacaca
gtggtcatagatatcctgaaagctgctccagacgacgagaaccgggacattggaacatgg
aaatcactggaccttgttgagaccttgctgcgactatctgaggcagggtactaccagcag
gtgtctgaactcttcaagttccccatccagaattgtcctgacatgcttgtactggctctg
ctgcaaatcacaccaacatggaacaccctcaaacaggaactgatatccacactgatgcca
atcttcttaggaaatcatccaaactcggctgttgtccttcattatgcttggcattgtcag
ggccactccagcaccatccggaccctgataatgcactcaatggcagagtggtacatgcgt
ggagaacagcacgaccagacacgactgtccagaatactggatgttgcacaagatcttaag
gccctctccatgctgttgaatgccacaccatttgcttttgtaattgacctggcttgtctg
gcttcaagacgtgaatatctcaagttggacaaatggctgtcagacaaaatccgagagcat
ggggagccgttcatacagacatcggtgaacttcttgaagcgacgctgtccacagctgatg
ggtggtccagccaaagacgaacaactaccacaggccaagagtcagatgctacccacggat
accatagctacaatgttgtcctgtctacagcactgtgccagccaagtttcccaggagttg
tcagaggctatacttaccatggtagcgaatgccagtatgatcctaaacaaagcgagacaa
gcaccaccggtaccgaaatccaacctaccaccaactctgctgaaccaaccaacctcacag
tcaaatctgctggacagtttggacaatgcaaacacactcggaattcccaaatcatggggc
atgtcaggggtcaactcgggcttcccccagaaccttacctccctgagcacgacagctaca
ccaggatccccagctaagggagctggcttccaacctatctcacaacccagtggcttcggg
gccatgcagaacatcacaaaccagctacaaagtctgtccatgtccaaccccatgggagta
ccaccaaggaatcccagtgtaaatacattgggaactataagctcccaggcagtaatcaaa
cagcaacagcaacaacaagtacagcagcagcagcagcagcaacagcaacaacaacagcag
cagcagcaacagcagcaacaacaacaacaacaacaacaacagcaacagcagcagcaacaa
ctacgagcaggagggatgtcacaggttagtggtgagatgtctaccattttccccgacatg
tcgcagcaatttacacgggaggttgaggatgaggccaactcgtatttccagaggatctac
aatcagcatccccaccctaccatgtctattgacgaggtgcttgacatgctgaaacgcttc
aaggactcgcccaacaggagggaaaaggatgtgtacgagtgtatgctacgtaatttattt
gaggagtatcgattcttcccccaataccctgagagggagctgcatattactgctgttttg
tttggagggatcattgaaaagggactagctacatacatggcacttggtattgccctgaga
tatgtgctggaggccttgaagaaacagctcaattctaaaatgtattacttcggaattgct
gcccttgaccgcttcaagacgagactgaaggactacccccagtactgtcaacatctggcc
gccattccccatttccagcagttcccgcagcatctgattgagtttgttgaatatggggca
agatcacaagagcctccagtgattccttccatatcacgaacgatgaccccgacagcagtt
ggtggggtatcgtttacagggaccgcaccgacagtgactcctacaccaaccagtgctgcc
atttcatctgcagaagggccgatgccaccggtgcttgccccagcccctgccgctgcccct
acccctgctgctgtcaccacgacaaccacagctaccacaacagctgtaacaacggggacc
accaagccaagcagcttacctaagccgtccatcgcaagtgctacaaacatcgacaccctc
ctagcgggtcagggtaatgaggaatcctctataccgccagagtcagttcaggacaaagtc
ttcttcatcttcaacaatctgtctttggccaacatggtccagaaggcggaggagttgagg
aaggagattactgaagactactattgttggtctgcccaatacctggtgatgaagagggcc
agcattgagcccaacttccacaccctgtacgcaaacttcctagatgccctgcagatcccc
gacattgctcatatggtcataagggagacctttaggaacatcaaggttttgctgcgaagt
gacaaaggggatgccaacttctcagacagaactctgctcaagaacctcggtcattggctc
ggcatgttgacgctggccaaaaacaaacctattttgcagattgacatagatctgaaggcc
ctgctgtacgaggcttatcacaagggagctagagaactattgtatgttgtccctttcaca
gccaaggtgcttgagtcgtgtgccaaaagcaaggtgttccgccctccaaatccatggacg
attggaataatgaatgttttagcagaacttcaccaggagccagatctgaagttgaacctc
aaatttgagatagaagtgctttgtaaaacattgacactggatcttaatgagctgaaccca
agtacgtacctgaaggacacatcacgaatatctaccactgagccccagctctccaacatg
gttaagagtatgccgccaccacccatgccaataccacagcctgagcagcccttggtccag
ctcacggccccagtccccactcccccagtttccactacatctgtcgcctctaccgtcacc
acaacaacgcccaacatgccacccaggccacagtttgcatttgatgaagttgtgactgca
aatctcaacagtattggatctcacattgtgacaagtgaccagattccactgtttcaagga
aacccgaaccttaagcagctagtgaagatagccttggagaagtctatccaggaactcctg
ccccctgtggtagagcgtaccataaaaatcacactgcagacctgtgaacagatcatcaag
aaggactttgcccttgatcccgaggagaaccggatgcgagcagcagcccaccacatggta
cgcaacatgacagctggtctggccctgatcacatcccgggaacccctctacctcagcatc
aacaacaacctcaagagtgcttttatgaccacgctcagagtgaatgagggtgctacacag
gcacagaaggagatgatcgaacaagctgcccagcttgtggcccaggaaaacacagaactg
gcctgtgtgtttatacagaaaacagctgtggaaaaggcaatacccgaaatagacaagcga
ctagctactgagtttgatctccgcaaacatgcaaggtcagaaggacgaagatactgtgac
ccagtcatactgacataccaggctgaacgcatgccggagcaaatccgactcaaggttggt
ggggtgactgctggacagatcgctgtatatgaggaattcgcccataacatcccgggtttt
cagcctaccaacgacccatcactgcctcctggtgtaccaaagccagtaccaacctattct
attgatgacctgacccagatcctagaccgtatcaggcgtgatatggaacagtatatgcag
cacttgatgggaatccccaccagtaacccgctggtggtccaactccacagtctgctggag
gctgtcctcctagcccgcaacaaccgagaggttgtcacctccattgctcttcttcagaag
gcggttgaaggtctactggatcactacacattctcccagctgtctaccgaccaagaccta
ctggtgcgcttcagggactgcaacctgatggtgctgaagagtttacaggaccagagggcc
tatggaccccagtggaccaacaaacaggttaccaggtgtttgattgaggtcggaggagac
aacaaatacaacgcggacgctgtagactgtctgatacgttcaggactggtcagcatgcag
cagtacgacctgtacctggtccaactcatggaaaacggactcaactacgtgggagtgatg
ttcaccatgcaactggtgcagcgctactgtgtagacgataaggccaacagtcccgtcaca
gaggtggactttgccaacaccattgaggccctgacacaggtgaacacacgtaaccagagg
cctcctgagggactttcccagatgctagaaggtctacaccccccagtggattttggtctg
ttagaacgtgccataggaggccccacttccatgatgcagtctgggatatcccaggcacgg
gaactagacgaccctccagggctccatgaaaagactgagttcctactgcgagaatgggtc
aatatgtatcactcacctgctgctggtcgggacagtactaaggctttcactgcttttgtg
caacagatgcaccagcagggaattctgaagactgatgatctcatcacacgattcttccgt
ctttgtacggagatgtgtgtggacctgtgttatcgcgctctcggtgaacaatcacagaac
cctgctctagtccgtgccaagtgctttcacacactcgacgcttttgttagactcattgcc
ctcctcatcaaacactcgggtgacactgctaacacggtcaccaagatcaaccttctcaac
aaggtgttgggtatcgtggctggagtactactgcaggaccacgctgtccgccaatccgag
ttccagcagctgccctatcatcgcatcttcatcatgctctttattgagctaaatgctcca
gaacacatccttgagaacattaatttccaagtgctcactgcattctgcaacacattccat
gtgctaaggccagccaaggctcctgggtttgcctatgcctggctggagcttctctcacac
cgagtgtttattgggcgactgctggccctaacaccccaacaaaagggctggggaatgtat
gcacagttgctgctcgatttgttcaagttcttgaccccgttcttacgcaatgctgagctg
acaaagccaactcaactcctgtacaagggtacattacgggtcctgttagtgctgctccat
gacttccccgagttcctgtgtgattaccattatgccttctgtgatgtcatcccaccaaac
tgtattcagatgcgcaatctcattctgagcgcattcccgcgcaacatgcgattacctgac
ccattcacaccaaatctcaaggtggacatgttggctgacatcgcacatccaccccgcata
cttaccaactttgccaagatgattgagccagcctcctttaagaaggacttggactcctac
ctgaagacaaggtcgcctgtcaccttcctgtctgagcttcgtagtaatctacagctgaac
gagccagggatgcggtacaacatcccgctgatgaacgcactagtgctgtatgtcgggaca
cagtccatccaaaatatccacagcaagggcctcaccccgagcatgtctaccattattcac
tcggctcacatggacatcttccagaacctgggtgtggaccttgacacagagggtcggtac
ctgttcctgacgtccatctccaaccagctacgatatcccaacagccatacttactacttc
agctgtacgctactctacctgttcgcagaggctaatactgaggccatacaggaacaaatc
acaagggtgctacttgaaaggttgattgtaaacaggccccacccatggggattacttatc
accttcattgaactcatcaaaaacccacagttcaagttctggaatcatgagtttgtacac
tgtgctccagagattgaaaagttatttgagtcggtagcccgttcgtgtatgcagcccaaa
acaggacagagtctgagagaggcggaaacaaacgaaattcactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (177)   
   KEGG ORTHOLOGY (1)   
   RefGene (173)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (13)   
   Pfam (13)   
All databases (202)   

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