KEGG   Mizuhopecten yessoensis (Yesso scallop): 110461348
Entry
110461348         CDS       T05079                                 
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:myi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110461348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:myi03041]
    110461348
Enzymes [BR:myi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110461348
Spliceosome [BR:myi03041]
 Complex C
  Other components
   Step II factors
    110461348
SSDB
Motif
Pfam: RRM_1 IBR Helicase_C OB_NTP_bind DEAD AAA_22 MIF4G_like_2 nSTAND3 ResIII AAA_19 Nup35_RRM_2 ABC_tran AAA_30 HA2_N CpxA_peri Helicase_RecD AAA_29
Other DBs
NCBI-GeneID: 110461348
NCBI-ProteinID: XP_021370463
Position
Unknown
AA seq 1914 aa
MTSCREYQEKVADLVAEWIETEEFPPPRDVIPTQVYYNSNQINRTNYTSRCSNVDGAASK
VTGCDPSDMDKPSSLEDMEAYVSFRMSQVTVDLSSASGGSDNAIDTKKRTIPTTSTKGTS
GTYSDQKTQTSANRRRSDNMFGQGGEYVISETDKEHNFAPTEQDEDSSASSSVSMETKCH
ASDTKRSKTNAFVDNLQKDKEKRKPLPFKTQKSSSQLKKKLHYDQGNKQDGRKPVNPKET
LHSISVTDSGSKPKITTLFVKLAETIREEDMNILGYIKHRLQNKMEFTLTGQTVETHTGN
TIISLQFPSRRAAQRLEADLKTDDAKSETKICCFYSFEDASKTTMSTKLKRDGMLNNYVR
EMTKRAASSLTKHKAKIDEVTEKLKKLKKSKDKFMSLEEYFVVDSERQALKDKQEELELQ
QKEFQNFITSAHQKFVEMLDSAVCDKPAISIMKAFGVECNRLDKALPMYARRSDILDIVK
NNQVSVIIGETGSGKSTQMAQYLYQTEFANAGMIACTQPRKIAAISVATYVACEMSSSVG
QVIGYKVGMQEKKTALTKVLFMTDHILLQECLKDRKLSSFSCIIIDEAHERSIYTDLLLG
MLKSCLTVRTDLRVVITSATIDPEVFVQYFGQCPVLPVSGRMFPVDIIWKEQTAGQESFS
NHIEECVRKAIDVHYNQPEGDILVFVTSPLESEKCCEKYKDYTKGKPQNFVCLQLHGKLQ
ADEQRKVFDPPSVGKRKIVFATNSAETSVTIPGIRYVIDTGLVKEMKYDAKRKMNTLNVT
TVTKSSANQRKGRAGRTGPGICYRLFTEDEYDRMETNMVPEILRVNLGQAMLKLIELNID
PLEFDFVMSPSAESMESAMETLEDIGAVSKRKITSLGKWISKLPLDPKLGVFIYDSLEIG
AGLEGMVIAAAASGSSIFFRVGTAEEKDVSDLKKIPFCHVDGDMLTNLNVFREWSKQPEK
SKGKWCYKNSINGKAIKGIRDIVNEILTTLKREMKITVPFKFEEPAKIDLLMIKPLLKVY
RQNISHYLGHPKAGYVLVTKDQRVEIHPSSALMSLASQPEWIVYDQVMRTSRDFAMAITP
ISEDIVKRGIKEGVLDVDLEEAKAKRITPVHREYVGSEVLRQVVGPRYTYLREFEDKLVQ
KCHGSLVVVEADRNNGELKIFSKLSNQQTLDGSLENVLNPIKSNFIDEEREEKLGVKSTD
RSVRAVVGAGGCTKTLFMPDEYNVVMIHCAVNKKEEFGYDDVYQHFSEFGKIKECKMYHH
KKNAPSLWGQVTYKKTEDAVKAVAETRGNPDLSARPNRRMSNDRSEKFKVRIQWCRRRSR
GFAFVNFASFLDADDAIRRSDILVGDSFAKIRKAHPSPNQSDEGKVFVVGLSKMVDEDVL
RESIANAGDLDPNTDIERVTVVREKVPLEKKDLIDTMKRRLCAEISSYVAPGSYELELKP
LREADHTFSAFVTFDNPQDGEGVCYKMDHSFIMNNQVVSAKPVLHCSLYIPKRIYEMSSD
AIDQCVLDLEEDGVRVKTKTLRNENVVVDINTDDVETLVRARRSFQDITQGEIIECAEST
SLKLLFTWEGRNKLKQIMNQTGTLILTDNRVMSVSIHGLQQNRQKAKQKIDEFLLMLSTG
NSEVIDLKGEGKPPGVLKAILMKYKTDLSGLCQETGLVAARLDPRKHRVTLFGEDDAVTK
TNAIITDIIANLSPDGLEKTDEPECVTCFCPIQQKDLYRVECCGHPYCKECLQVQIQMCI
TNREFPMKCEQDECTTPFTWHDIINLSKMGFVKVSELTDSSVSKFLQGNKKFRFCVTPDC
PVVYRVTKTGKSFICPECDIKICTSCQVQFHDGLTCAMFKVEGNEDVSMRRWLEKNKANR
KRCPNCATPIEKNGGCNHMSCLTCGKHICWLCLNFFDDSGACYGHLDKAHGSFV
NT seq 5745 nt   +upstreamnt  +downstreamnt
atgacctcatgtcgagaataccaagaaaaggtcgccgacctggtggctgagtggattgaa
acagaagagttcccgccaccaagggacgtaatacctactcaagtctactacaattcaaac
caaatcaacagaacaaattacacaagccggtgttctaacgtagatggcgctgcatccaaa
gtgacaggatgtgacccttcagatatggacaaaccatcctctctagaagacatggaggcg
tacgtttcattccgaatgtctcaagtcaccgtagacctgtcgtctgcttcgggaggatct
gacaatgcaattgatacgaaaaagagaactattccgacaaccagtacgaaaggtacgtct
ggaacctatagtgatcagaaaacacagacttccgctaacagaagacgatccgacaacatg
tttggtcaaggtggtgagtacgttattagtgagacggataaagaacacaattttgctccg
actgagcaagatgaggactcaagtgcatcgagttccgtatccatggaaacgaaatgccat
gcaagcgacacaaaaaggagtaagacaaacgcctttgttgataatttgcagaaagataag
gaaaaaagaaaacctttaccattcaaaacacaaaagtcttcttcacaattaaaaaaaaag
ctgcattatgatcaaggcaacaaacaggatggcagaaaacccgtcaatccaaaagaaacg
ttacactcaataagcgtcactgacagtggatcgaagcctaaaattacaacattgtttgtg
aaattagcagaaaccataagggaggaagatatgaacattttggggtatattaaacatcgt
ctacaaaacaagatggaatttacattaacaggccaaaccgtcgaaacacatactggaaat
acaatcatcagtctacagttcccaagtagacgtgctgctcaacgccttgaagctgatctt
aaaacagatgatgccaaatccgaaacaaaaatctgctgtttttattcatttgaagacgca
agcaagacaactatgtcaacgaaattgaaaagagatggaatgctcaataattatgtaagg
gaaatgacaaaaagagcagcttcgtctttaacaaagcataaagcaaagattgatgaggtg
acagaaaaactgaagaaactaaagaagtccaaagataaatttatgtcattagaggaatac
ttcgttgtggattctgaaagacaagcattgaaagataaacaagaggaactggaacttcaa
caaaaagagtttcaaaactttattacgtcggctcatcaaaagttcgttgaaatgctggac
tctgctgtatgtgacaaaccagctatttcaattatgaaagcttttggcgtggaatgtaac
agacttgataaagccttaccgatgtacgcaaggagatcagacatacttgatattgtgaag
aacaatcaggtgtctgtcatcattggagaaacaggatcaggaaagagtacgcagatggct
cagtacctttaccagaccgaatttgccaacgcaggaatgatcgcttgcacacaacctcgt
aaaatagccgccatcagtgttgctacttacgttgcttgcgaaatgagttcatctgttgga
caggttatcgggtataaggttggaatgcaggaaaagaagacggcacttacaaaggtgcta
tttatgaccgatcatatcctattgcaggaatgtctgaaggacaggaagctttcctctttt
tcctgtataatcatagacgaagctcacgaaagaagtatatacactgatctgttactcggt
atgctcaaaagctgtcttaccgtccgcactgacctccgtgttgtgatcacatctgctacc
attgaccctgaggtcttcgtccagtacttcggacaatgtccagtactacctgtgtcagga
agaatgtttccagtagatatcatatggaaagaacaaactgctggtcaagaatcgttttca
aaccacatagaagaatgtgtcaggaaggcaattgatgtgcattacaatcaacctgaagga
gacatcctggtgtttgttacctctccactagaatcagaaaaatgttgcgagaaatacaag
gattacaccaaaggtaaacctcagaattttgtttgtttacaactacatggaaaacttcag
gctgacgaacaaagaaaggtattcgaccccccttcagtaggtaaacgcaaaatcgtgttc
gctaccaacagtgctgagacgtcggttaccatacccggcatcagatatgttatcgacact
ggcttggtcaaggaaatgaagtacgatgcaaagcgtaaaatgaacacgttaaatgttaca
acagtgacgaaaagttcagccaatcagcgaaaaggtcgtgcaggacgaactggaccaggt
atatgctaccgactgttcacagaagatgaatatgacagaatggaaacgaatatggttcca
gagatactacgagtgaatcttggtcaggcaatgttgaaactgatagagctcaacattgac
ccactggagtttgattttgttatgtcaccttccgcggaatctatggagagcgcaatggaa
actttggaagatattggagcagtttcaaagagaaaaatcacaagtctcggaaaatggatt
tcgaagcttccccttgatccaaaactaggcgtgttcatttacgactcattggaaattgga
gctggtcttgaaggaatggtaattgcagcagctgccagtggatcctcaattttctttcga
gtaggaactgccgaggaaaaggacgtttctgacctgaagaagattccattttgtcatgtt
gatggcgatatgttgacaaatttgaacgtattcagggaatggagcaaacagccagagaaa
tcaaaagggaagtggtgttacaaaaattcaattaacggcaaagcaatcaaaggaatacga
gatatcgtgaatgaaattctcactacacttaaaagagaaatgaaaataaccgtaccattc
aagtttgaagaacctgcaaagattgaccttttgatgataaaacctctcttgaaagtttac
cggcagaatattagccactaccttggtcatccgaaagcaggttatgtactagtcacgaag
gaccaaagagtagaaattcatccatcatcagctttgatgtctttggccagtcaaccagag
tggattgtctacgaccaggtgatgagaacatcaagggactttgcgatggccattactccg
atcagtgaagatattgtaaaaaggggaatcaaagaaggagttcttgatgtggatctagag
gaagcaaaggcaaaacggataactcctgttcatagagaatatgtcggatcagaagtgctc
cggcaagtcgttggtccaaggtacacatatctccgagagtttgaagataaattagtacaa
aaatgtcatggatctcttgtggtggtggaggctgaccgtaacaatggcgagctgaagata
ttctcaaaattgtccaatcaacaaacactggacggttcgttagaaaacgtgcttaaccct
atcaaaagtaatttcattgacgaggaaagagaagaaaaacttggcgtcaagtcgacagac
cgatctgttagagctgtggtaggggctggaggctgtacaaagactttgtttatgcctgat
gagtacaatgtcgtaatgatacattgtgctgtcaacaaaaaggaggaatttggatacgat
gatgtgtatcaacacttcagtgaatttggaaaaataaaagagtgcaaaatgtatcatcac
aaaaagaatgcaccgtctctatggggtcaggtaacttacaagaaaacagaagacgcagtt
aaagctgtcgcagaaacacgaggaaacccagatctttctgcccgaccaaatagacgaatg
tcaaatgataggtccgagaagttcaaagtccggatacagtggtgtcggagacgttcccga
ggatttgccttcgtcaattttgcgtcctttttagatgctgacgatgctattcgacggagt
gacatcctagtaggagactcctttgctaagataagaaaagctcatccttcgccaaatcaa
tcagatgaaggtaaggtgtttgttgtcggactaagcaaaatggttgatgaagacgtttta
agggaaagtatagcaaacgctggtgatcttgatcctaatacagatatcgaaagggtcaca
gttgtaagagaaaaagttccactggaaaagaaggatttgattgacacaatgaaaagacga
ctgtgtgctgaaataagtagttatgtcgcacccggttcatacgagttggagctaaaacca
ttacgagaagccgaccacaccttctctgcattcgtaacgtttgataatcctcaagatggc
gaaggagtgtgttataaaatggatcattcattcataatgaataatcaggttgtctctgcc
aagccagttctgcattgttccttgtatatcccgaagagaatttacgaaatgagcagcgac
gctatagatcaatgcgtcttggatcttgaagaggacggagttcgggtgaagacaaagact
cttcgaaacgaaaacgtagtcgttgatatcaacacagacgacgtagaaactcttgtcagg
gctagacggtcttttcaagacattacccaaggggaaattatcgagtgtgcagaatcaact
tcgttgaagttgttattcacatgggaaggtaggaacaagttaaagcagatcatgaatcaa
acaggaacactcatccttacagacaacagggtaatgtccgtctccatccatgggctccaa
cagaatcgacaaaaggcaaagcaaaaaatagacgaatttcttttgatgctttcaacaggc
aattctgaagtgatagacttaaaaggcgaaggaaaaccacctggagttttgaaggcaatt
ctgatgaaatacaaaactgatctctctggattgtgtcaggagacaggcttagttgctgct
cgcctggatccaagaaaacacagagtgacattgtttggagaagatgatgccgtcaccaag
acaaatgcaatcatcacagatatcattgcaaatttgtcccccgatggactagaaaaaacc
gatgaaccagaatgtgttacttgtttttgtcccatacagcaaaaagatttgtaccgagtg
gaatgctgtggtcacccatactgtaaggaatgtctccaggttcagatccaaatgtgtatt
accaacagagaattccctatgaaatgtgaacaggatgagtgtaccactccatttacgtgg
catgatatcattaatctgtcgaaaatgggttttgtcaaagtctctgaattaactgattcg
tcagtcagtaaatttcttcaaggaaataaaaaatttcgcttttgcgtaacgcccgactgc
cctgttgtctaccgcgtaacaaagactggtaagtcattcatctgtccagaatgtgacatc
aagatctgcacaagttgccaagtacagttccatgatggcttaacatgtgccatgttcaag
gtagagggaaatgaagacgtgtcaatgagaaggtggctcgaaaagaacaaagcgaaccga
aaaagatgtccaaactgtgccactcctatagaaaagaacggtggatgcaaccatatgtcc
tgtttgacatgtggaaagcatatctgttggttgtgtctgaatttttttgatgatagtggt
gcatgctatgggcatctcgataaagctcacggcagtttcgtttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (17)   
   Pfam (17)   
All databases (88)   

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