KEGG   Naumovozyma castellii: NCAS_0A07730
Entry
NCAS_0A07730      CDS       T02233                                 
Symbol
NCAS0A07730
Name
(RefSeq) hypothetical protein
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
ncs  Naumovozyma castellii
Pathway
ncs03013  Nucleocytoplasmic transport
ncs03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ncs00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    NCAS_0A07730 (NCAS0A07730)
   03015 mRNA surveillance pathway
    NCAS_0A07730 (NCAS0A07730)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncs03019]
    NCAS_0A07730 (NCAS0A07730)
Enzymes [BR:ncs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     NCAS_0A07730 (NCAS0A07730)
    5.6.2.5  RNA 5'-3' helicase
     NCAS_0A07730 (NCAS0A07730)
Messenger RNA biogenesis [BR:ncs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     NCAS_0A07730 (NCAS0A07730)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     NCAS_0A07730 (NCAS0A07730)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase UvrD-helicase Viral_helicase1 DEAD nSTAND3 Helicase_RecD AAA_22 PhoH T2SSE DUF4088 AAA_16 DUF2946 ATPase
Other DBs
NCBI-GeneID: 11526876
NCBI-ProteinID: XP_003673712
UniProt: G0V783
Position
1:complement(1536668..1539646)
AA seq 992 aa
MSTSITEDVLKPTIEENDLFYNSESDFAKVAHELADMEDELDGQDEETAALQAAQMDADG
MHHNFPQAEHACAYCGVDSPTCVIKCNSCNKWFCNSKNGTNSSHIVNHLVLSHHNVVSLH
PDSDLGDTILECYNCGCKNVFLLGFVSAKSEAVVVLLCRMPCAQTKNVNWDTDQWQPLIE
DRQFLSWVAEEPSEEEKLKARLITPSQISKLEAKWRSNKDATINDIDAPEEQEELPPLLL
RYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVTWSLALNNRHLASFALSTFESNE
LKVAVGDEMILWYSGVQHPDWEGRGYIVRLPNSFQDTFTLELKPSKVPPPTNLTTGFTAE
FIWKGTSYDRMQDSLKKFAIDKKSISGYLYYKILGHQVVDITFDVPMPKQFSIPHFTQLN
DSQSNAVQHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKERVLVCAPSNVAVDHLAA
KLRDLGLKVVRLTAKSREDVESSVSNLALHNLVARSSKGELRKLLTLKEEVGELSASDTK
KFVKLVRRTEAEILAKADVVCCTCVGAGDKRLDTKFRTVLIDESTQATEPECLIPIIKGA
KQVILVGDHQQLGPVILERKAGDAGLKQSLFERLISLGHIPIRLEVQYRMNPYLSEFPSN
MFYEGSLQNGVTIEQRTVPNSTFPWPIHDVPMMFWANYGREELSSNGTSYLNRIEAMNCE
RIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKEMYVKVEVASVDAFQGREK
DYIILSCVRANDQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLSKNILWNHLLLHFRE
KGCLVEGTLDNLQLCTVQLTRPKPKRQQNMNSQFQLNMNAEMSKFPNVQDFDTQSLMSFG
GQAGGFNSGFGNNEDFSSYLNNDYWNFENFQTVPPGAAPDFNNGDSMSTNVYSKNGPMLD
SNYAAELERNGPTGSRYDANEGLSKDFNSLNI
NT seq 2979 nt   +upstreamnt  +downstreamnt
atgtctaccagcataactgaagatgttttaaagcctaccatagaggaaaatgatttattt
tacaactctgaaagtgatttcgcaaaagtagctcacgagttagccgacatggaagatgaa
ttagacggccaggacgaagagaccgccgctctacaagctgctcaaatggacgcagatgga
atgcaccataatttccctcaagcagaacatgcatgtgcttattgtggtgtggattcgcca
acgtgcgttattaagtgtaatagttgcaataaatggttttgtaattctaagaatgggacc
aatagttcccatattgtcaatcatttggttttgtcccatcataatgtggtttcgttacat
ccagactcagatttgggggataccattttggaatgttataattgtggttgtaagaacgta
ttcttattgggatttgtctctgctaagagtgaagcagttgtcgtcttactttgtagaatg
ccatgtgctcaaacaaagaacgttaattgggatactgatcaatggcaacctttaattgaa
gatagacaatttttatcatgggtcgctgaagaaccaagtgaagaggaaaaattaaaggca
agactaatcaccccaagtcaaatctccaaattggaagccaaatggagatctaataaagat
gcaacaattaatgacattgatgctccagaggaacaggaggaacttcctcctttactatta
agataccaagatgcgtatgaatatcaaagatcatatggtcctttaatcaaattggaagca
gattatgataaacaattaaaggaatctcaagcattggaacatatctctgtaacatggtct
ctagcattaaataatagacaccttgcatcgtttgcactatcaacttttgaatctaacgag
ttgaaagtggcagttggagatgaaatgatcttatggtattcaggagtacagcacccagat
tgggaaggtcgtggttatattgttcgtttaccaaacagtttccaagatacatttacatta
gaattaaaacctagcaaagtgccaccaccaactaacttgactactggatttaccgctgaa
tttatttggaagggtacctcatatgatagaatgcaagatagtttaaaaaagtttgccatt
gataaaaaatctatctcaggttatctgtattataaaattttaggccatcaagttgtggat
attacattcgatgttccaatgcccaaacaattttcaattccacattttacacaattgaat
gattcacaatcaaatgctgtacaacatgttcttcaaagaccactttctttgattcaaggg
cctccaggtactggtaagacggtaacatcagcaactattgtttatcatttatcaaagatt
cataaggaaagagttctagtttgtgctccatcaaatgttgcagttgatcaccttgcagca
aagttacgggatttagggttgaaggttgttagattaaccgcaaagagtcgtgaagatgtg
gaaagttctgtatcgaacctagctctccacaacctagttgctagaagctctaaaggtgag
ttgagaaaattactcaccttaaaggaagaagtaggtgaactatctgccagtgatacaaaa
aaatttgtcaaattggttagaaggacagaagctgaaattcttgctaaagcagatgttgtc
tgttgcacttgtgtcggtgccggtgacaaaaggttagataccaaatttagaactgttctt
attgatgaaagtactcaagccactgaaccagaatgtctaattcctatcattaagggtgct
aaacaagttatcttagttggtgatcaccaacaattaggtccagttatcttggaaagaaag
gcaggtgatgctgggttaaagcaatcattatttgaaagattgatctccttgggacatatc
ccaattagactggaagttcaataccgtatgaatccgtatttaagtgagttcccaagtaat
atgttttatgaggggtcgttacaaaatggtgtaaccattgaacaaagaactgttccgaac
agtactttcccatggccaattcatgatgttccaatgatgttttgggcaaattatgggagg
gaagaactatcatctaatggtacatcatatctaaatagaattgaggccatgaattgtgag
cgtatcattacgaaactttttagagacggggttaaaccagaacaaattggtgttattacc
ccatatgaaggtcaaagagcttatattcttcagtacatgcaaatgaacggatctttagat
aaagaaatgtatgtcaaagtggaagtggcatcagttgatgcgttccaaggtcgtgaaaaa
gattatattattttatcatgtgttcgtgccaatgaccaacaggcaattgggttcttacgt
gatcctcgtcgtttgaatgttggtttaactcgtgcaaaatatgggttagtaattttaggt
aatccaagatcattatccaagaatattttgtggaatcatttattacttcattttagagaa
aagggttgtttggtagaaggtacattggataatcttcaattgtgcactgttcagttgaca
agaccaaaaccaaagaggcaacaaaatatgaatagtcagttccaattaaatatgaatgct
gaaatgagtaaatttccaaatgttcaagattttgatacacaaagtttgatgtcatttggt
ggacaagcaggtggatttaacagtgggtttggaaataatgaagacttctcttcctacttg
aataatgattattggaattttgaaaatttccaaactgtgccacctggagcggctcctgat
ttcaataatggagattcaatgtccactaatgtttactccaagaatggtcctatgttagac
tcaaattatgcagcagaattggaaagaaacggtccaactggctctagatatgatgcaaat
gagggcttaagcaaagattttaactctcttaacatttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (35)   

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