KEGG   Nicotiana tomentosiformis: 104100749
Entry
104100749         CDS       T05025                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03013  Nucleocytoplasmic transport
nto03015  mRNA surveillance pathway
nto03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104100749
  09122 Translation
   03013 Nucleocytoplasmic transport
    104100749
   03015 mRNA surveillance pathway
    104100749
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104100749
   03041 Spliceosome [BR:nto03041]
    104100749
Enzymes [BR:nto01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104100749
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104100749
Spliceosome [BR:nto03041]
 Complex C
  Other components
   EJC/TREX
    104100749
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104100749
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1 DNA_repr_REX1B
Other DBs
NCBI-GeneID: 104100749
NCBI-ProteinID: XP_009606356
Position
Unknown
AA seq 428 aa
MGDSKENDAYEEELLDYEEDDEKAPDSISAKVSGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAMV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQTIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAQLNKLLVECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggagactcaaaggagaacgatgcttatgaggaggagcttctcgactacgaagaagat
gacgaaaaagcccctgattccatctccgctaaagttagcggcgagtccgccaagaagggt
tatgttggcattcacagttccggattcagagactttctgctaaagccagagctattgcgg
gctattgtggattcagggtttgagcatccgtctgaagtgcaacatgagtgtattccacaa
gcaatcctaggcatggatgttatttgtcaagctaaatctggaatgggcaaaactgctgtt
tttgttctttcaactctgcaacagattgaacctgttgctggtcaggttgctgccatggtt
ctatgtcacacaagggaattggcttatcagatctgtcatgaatttgagaggttcagcacg
tatttgcctgatatcaaggttgctgttttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgccctcatatagttgttggaactcctggaagaatacttgca
ttggctagagacaaggacctgtctttgaggaacgtgaggcattttatactggatgaatgc
gacaaaatgcttgaatcacttgacatgagacgagatgtgcagacaatcttcaagatgact
cctcatgacaagcaagtaatgatgttttcagcaacactcagcaaagagattcgccctgtt
tgcaagaaatttatgcaagatccaatggaaatttatgtagacgacgaggccaagttgacc
cttcatggacttgtacagcactacatcaaattgagcgaaacggagaagaaccggaagctg
aatgacctgctggatgctttggacttcaatcaagttgttatatttgtcaagagcgtgagc
agagcagcacagctgaacaagttgcttgttgagtgcaattttccatctatctgcatccac
tctggcatgactcaggaagagagattgactcgctacaagaatttcaaggaggggcacaag
agaattcttgttgcaactgatttggttggcaggggcattgacattgaaagggttaacatc
gttgttaactatgacatgccagattccgcagacacttatcttcacagagttggtagagct
ggtaggtttggaactaaaggtcttgccatcacatttgtgtcgtctgcatcagattctgat
gttcttaaccaggttcaggagaggttcgaagtggatataaaagagcttccggagcagatt
gatacttctacatacatgccatcatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (23)   

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