KEGG   Paenibacillus sp. FSL P4-0081: P40081_12770
Entry
P40081_12770      CDS       T03332                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
paen  Paenibacillus sp. FSL P4-0081
Pathway
paen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    P40081_12770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paen03019]
    P40081_12770
   03009 Ribosome biogenesis [BR:paen03009]
    P40081_12770
Enzymes [BR:paen01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     P40081_12770
Messenger RNA biogenesis [BR:paen03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     P40081_12770
Ribosome biogenesis [BR:paen03009]
 Prokaryotic type
  rRNA helicases
   P40081_12770
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 CMS1 Helicase_RecD
Other DBs
NCBI-ProteinID: AIQ28945
UniProt: A0A7U4HG39
Position
2929776..2931434
AA seq 552 aa
MKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPLAMAGSDLIGQAQTGTGKTAAFGIPL
ISKIAREEEKIVALIMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML
FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP
DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRITAERLLAMVEDGGELNEYKGIAIQLLEQYDSVQLLSAAM
KLLTGDNKDAQIELTPEDPIRAKRRGGKNDIRSGRKPNGGGYGGNRTGSGTGSSSGGGYR
GNRDNASSGGSTRGGYSSGYGSNSGSSYGGGYKGNRDAGAGRDGGASRSADRKPSARPSS
TSTRPAKQDYDV
NT seq 1659 nt   +upstreamnt  +downstreamnt
ttgaaaacattcgcagaattcggcttggagccaaaagtgctacaggcaatcactgaacta
ggatttgaggaagcaacacccattcaggagcaagctatccctcttgcaatggccggatcg
gatctgatcggccaggcacagacgggtacaggtaagaccgctgctttcgggattcccctc
atttccaagatcgcccgggaagaagagaaaattgttgcattgattatgacgcctacacgc
gagcttgctatccaagtagcagaagaaatcggcaaattgacccgcttcaagggacttcgt
tcactggccatctacggcgggcaggatatcggccgtcaaatccgcggacttaagaagaaa
ccacagattattattggtactcctggacgtctcctggatcatatcaaccgcaaaaccatc
cgtcttgatgatgtacagaccattgtacttgatgaagctgatgaaatgctggatatggga
ttcatggaggatatccagacgatcctcaagctcgttccggaagaacgccagacgatgctc
ttctcggctactatgcctcctaacattcaacgtcttgcccagcagttcctgaagaaccca
cagcatgtatccgtaattcctaagcaaatcagtgcaccgctaatcgatcaggcttatatt
gaagttcctgaacgccagaagttcgaagcgctcagccgtttgattgatatggagtcccct
gatctggctatcgtcttcggccgtaccaaacgccgggtagacgagcttgctgaaggattg
cagaaacgcggatattccgctgatggcctgcatggtgacttgtcgcagaaccagcgcgat
gctgtaatgcgcaaattccgcgacggcagtattgatgtactggttgctacagacgttgca
gcccgcggtctggacgtttccggtgtaactcatgtaattaactttgaccttccgcaggat
ccggaaagctatgtacaccgtatcggccgtaccggccgtgccggtaaagaaggaactgca
tggtccttcgtaactcctcgcgaaatggatcacctgcacctgatcgaacgtgttacccgt
caccgcattacccgtaaaccgcttcctactatggctgaggctattgaaggcaaacagcgc
attacagctgaacgtctgctggcaatggttgaggacggcggcgaactgaacgaatacaaa
ggtattgccattcaattgctggaacaatatgattctgtacagctgctatccgcagctatg
aagcttcttaccggcgataacaaggatgcgcaaatcgagctgactcctgaagatccgatc
cgcgctaaacgccgcggaggcaagaacgatattcgcagcggacgcaagcctaacggcggc
ggctatggcggcaatcgtacaggctccggaactggcagcagcagtggcggcggctatcgc
ggtaaccgtgataatgccagcagcggcggaagcacgcgtggcggctacagcagcggctat
ggcagcaacagcggcagcagctacggcggcggctacaaaggcaaccgtgatgcgggagca
ggacgcgatggcggtgcaagccgcagcgcagaccgtaaaccgtccgcccgcccaagcagc
acaagcacccgtccggctaaacaggattacgacgtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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