KEGG   PATHWAY: bmy04142
Entry
bmy04142                    Pathway                                
Name
Lysosome - Brugia malayi (filaria)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
Pathway map
bmy04142  Lysosome
bmy04142

Other DBs
GO: 0005764
Organism
Brugia malayi (filaria) [GN:bmy]
Gene
BM_BM3851  Bma-vha-5; Uncharacterized protein [KO:K02154]
BM_BM10100  Bma-vha-6; Uncharacterized protein [KO:K02154]
BM_BM13938  Bma-unc-32; Uncharacterized protein [KO:K02154]
BM_BM14003  Bma-vha-16; Uncharacterized protein [KO:K02146]
BM_BM5791  Bma-vha-15; Uncharacterized protein [KO:K02144]
BM_BM5332  Bma-vha-1; Uncharacterized protein [KO:K02155]
BM_BM6434  Bm6434; Uncharacterized protein [KO:K02155]
BM_BM13683  Bma-vha-4; Uncharacterized protein [KO:K03661]
BM_BM4372  Bma-rbc-1; Uncharacterized protein [KO:K24155]
BM_BM6814  Bma-rbc-2; nuclear localization signal binding protein, putative [KO:K24738]
BM_BM4262  Bm4262; Uncharacterized protein [KO:K25442]
BM_BM4263  Bma-lmd-3; Uncharacterized protein [KO:K25442]
BM_BM3985  Bm3985; Uncharacterized protein [KO:K13289] [EC:3.4.16.5]
BM_BM2365  Bma-cpr-6; Uncharacterized protein [KO:K01363] [EC:3.4.22.1]
BM_BM951  Bm951; Uncharacterized protein [KO:K01363] [EC:3.4.22.1]
BM_BM8660  Bma-asp-4; ShTK domain containing protein [KO:K01379] [EC:3.4.23.5]
BM_BM3754  Bma-cpz-1; cathepsin Z-like cysteine proteinase, putative [KO:K08568] [EC:3.4.18.1]
BM_BM877  Bm877; Uncharacterized protein [KO:K01369] [EC:3.4.22.34]
BM_BM5835  Bm5835; Uncharacterized protein [KO:K12309] [EC:3.2.1.23]
BM_BM6281  Bm6281; Uncharacterized protein [KO:K01201] [EC:3.2.1.45]
BM_BM5269  Bma-gana-1; Uncharacterized protein [KO:K01204] [EC:3.2.1.49]
BM_BM7253  Bm7253; Glycosyl hydrolases family 2, sugar binding domain containing protein [KO:K01195] [EC:3.2.1.31]
BM_BM6173  Bm6173; Uncharacterized protein [KO:K01206] [EC:3.2.1.51]
BM_BM5792  Bma-hex-1; Glycosyl hydrolase family 20, catalytic domain containing protein [KO:K12373] [EC:3.2.1.52]
BM_BM2542  Bm2542; Uncharacterized protein [KO:K01192] [EC:3.2.1.25]
BM_BM4424  Bma-aman-1; Uncharacterized protein [KO:K12311] [EC:3.2.1.24]
BM_BM7415  Bm7415; ab-hydrolase associated lipase region family protein [KO:K01052] [EC:3.1.1.13]
BM_BM5102  Bm5102; Uncharacterized protein [KO:K06129] [EC:3.1.1.5]
BM_BM4822  Bma-crn-6; Uncharacterized protein [KO:K01158] [EC:3.1.22.1]
BM_BM5759  Bma-pho-14; Histidine acid phosphatase family protein [KO:K14410] [EC:3.1.3.2]
BM_BM2418  Bm2418; Histidine acid phosphatase family protein [KO:K14410] [EC:3.1.3.2]
BM_BM14766  Bma-ppt-1; Uncharacterized protein [KO:K01074] [EC:3.1.2.22]
BM_BM5946  Bma-tsp-7; Uncharacterized protein [KO:K06497]
BM_BM7147  Bma-scav-2; CD36 family protein [KO:K12384]
BM_BM3151  Bm3151; Uncharacterized protein [KO:K12385]
BM_BM3493  Bma-slc-17.9; conserved hypothetical protein,hypothetical protein [KO:K12301]
BM_BM13827  Bm13827; Uncharacterized protein [KO:K21398]
BM_BM4059  Bm4059; ABC transporter family protein [KO:K05656]
BM_BM1889  Bma-cln-3.2; Uncharacterized protein [KO:K12389]
BM_BM13797  Bma-chc-1; putative clathrin heavy chain, putative [KO:K04646]
BM_BM13804  Bma-apg-1; Uncharacterized protein [KO:K12391]
BM_BM4406  Bma-apm-1; Uncharacterized protein [KO:K12393]
BM_BM13789  Bma-unc-101; Clathrin coat assembly protein AP47, putative [KO:K12393]
BM_BM13787  Bma-aps-1; adapter-related protein complex 1 sigma 1B subunit, putative [KO:K12394]
BM_BM12018  Bma-apd-3; Adaptin, putative [KO:K12396]
BM_BM5339  Bma-apb-3; Uncharacterized protein [KO:K12397]
BM_BM6677  Bma-aps-3; adaptin or adaptin-related protein 8, putative [KO:K12399]
BM_BM7178  Bm7178; LITAF-like protein, putative [KO:K19363]
BM_BM3409  Bm3409; Uncharacterized protein [KO:K19363]
BM_BM7179  Bm7179; Uncharacterized protein [KO:K19363]
BM_BM9194  Bm9194; uncharacterized protein [KO:K19363]
Compound
C00002  ATP
C00008  ADP
C00159  D-Mannose
C00275  D-Mannose 6-phosphate
Reference
  Authors
Eskelinen EL, Tanaka Y, Saftig P
  Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
  Journal
Trends Cell Biol 13:137-45 (2003)
DOI:10.1016/S0962-8924(03)00005-9
Reference
PMID:1883197
  Authors
Neufeld EF
  Title
Lysosomal storage diseases.
  Journal
Annu Rev Biochem 60:257-80 (1991)
DOI:10.1146/annurev.bi.60.070191.001353
Reference
PMID:2943218
  Authors
von Figura K, Hasilik A
  Title
Lysosomal enzymes and their receptors.
  Journal
Annu Rev Biochem 55:167-93 (1986)
DOI:10.1146/annurev.bi.55.070186.001123
Reference
  Authors
Janvier K, Bonifacino JS
  Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
  Journal
Mol Biol Cell 16:4231-42 (2005)
DOI:10.1091/mbc.E05-03-0213
Reference
  Authors
Vergarajauregui S, Puertollano R
  Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
  Journal
Autophagy 4:832-4 (2008)
DOI:10.4161/auto.6567
Reference
  Authors
Jaskolka MC, Winkley SR, Kane PM
  Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
  Journal
Front Cell Dev Biol 9:698190 (2021)
DOI:10.3389/fcell.2021.698190
Reference
  Authors
Majdoul S, Compton AA
  Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
  Journal
Nat Rev Immunol 10.1038/s41577-021-00626-8 (2021)
DOI:10.1038/s41577-021-00626-8
Related
pathway
bmy00511  Other glycan degradation
bmy00531  Glycosaminoglycan degradation
bmy04130  SNARE interactions in vesicular transport
bmy04140  Autophagy - animal
bmy04144  Endocytosis
KO pathway
ko04142   

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