KEGG   Populus euphratica (Euphrates poplar): 105109660
Entry
105109660         CDS       T05872                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
peu  Populus euphratica (Euphrates poplar)
Pathway
peu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:peu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105109660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:peu03041]
    105109660
   03009 Ribosome biogenesis [BR:peu03009]
    105109660
Enzymes [BR:peu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     105109660
Spliceosome [BR:peu03041]
 Complex A
  U2 snRNP components
   U2 related factors
    105109660
 Complex B
    105109660
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    105109660
Ribosome biogenesis [BR:peu03009]
 Eukaryotic type
  90S particles
   Helicases
    105109660
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N DEAD Helicase_C AAA_22 AAA_19 nSTAND3 SRP54 ResIII ABC_tran T2SSE AAA_30 Flavi_DEAD PhoH AAA_7 AAA_33 FtsK_SpoIIIE TsaE NACHT AAA_29
Other DBs
NCBI-GeneID: 105109660
NCBI-ProteinID: XP_011002735
Position
Unknown
AA seq 728 aa
MGTERKRKVSLFDVVDETSLSAKIVKSNGAMGNNNNGGSSLINRWNGKPYSQRYYDILEK
RKNLPVWHQKEDFLQVLKKNQVIILVGETGSGKTTQIPQFVLEAVDLESPDKRRKMMIAC
TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLSTDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFGEAPLM
KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPHGDILVFLTGEEEIEDACRKITK
EIGNLGDQVGPVKIVPLYSTLPPAMQQKIFEPAPPPLQEGGPSGRKIVVSTNIAETSLTI
DGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF
NQDLQPQTFPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DEGNMTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNHRALKAADNVRQQLVRIMAR
FNLKLCSTDFNSRDYYINIRKAILAGYFMQVAHLERSGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNYIRTVLDIRGEWLVDIAPHYYDLQNFPQCEAKRVLEKLYRKRERE
REENRNRK
NT seq 2187 nt   +upstreamnt  +downstreamnt
atgggtacggagaggaagaggaaggtgagtttattcgacgtggttgacgagacgtcgctt
tctgcgaagatcgtgaaatcgaacggggcgatgggtaacaataacaatggaggaagtagt
ttgataaatcggtggaatgggaagccctactcacagaggtactatgatatattagagaag
aggaagaatttgcctgtttggcatcaaaaagaggatttcttacaagttttgaagaaaaat
caggttatcatccttgttggcgagactggtagtggtaaaaccactcagattcctcagttt
gttttggaagctgtagacttagaatctccggataaacgtaggaagatgatgattgcatgt
acccaacctcgaagggtggctgcaatgtctgtttctcgacgtgttgctgaggagatggat
gttacaattggcgaagaggttggttatagcatccgttttgaagactgtagcagtgcgaga
acggttttgaagtatcttactgatggtatgcttttaagagaggcaatgaccgatccactt
ttggaacggtacaaagtaataattcttgatgaggcccatgaaagaactctatcaacagat
gtgctatttgggcttcttaaagaagtgctgaaaaataggcctgacctgaagctagttgta
atgagtgcaacactagaggctgagaaatttcagggttattttggtgaagcacctcttatg
aaagttcctggcaggcttcatccggttgagattttttatacccaggagcctgagagagat
tacctagaggcagctattcggacagttgtccagatacacttgtgtgaaccccatggggac
atacttgttttcctaactggtgaggaggagatagaagatgcttgccgaaaaataacaaaa
gaaattggaaatttaggggaccaagtagggccagtgaaaatagtgcctctatattctacg
cttccaccggccatgcagcaaaaaatatttgaacctgctccacctccactacaggagggt
ggcccgtctggaaggaagattgtggtgtcaacaaacattgcagaaacttctttgactata
gatggtattgtttatgttattgaccctggcttctcaaaacaaaaggtttataacccacga
gtgcgggttgagtctttgttagtttcccccatatcaaaggctagtgctcaccagagatca
ggacgtgctggaagaactcaaccaggcaaatgttttagactctacacagagaagagtttc
aatcaggatctccagccacagacctttccagaaatattgcggtcaaacctggcaaataca
gttctaacgttgaagaaattggggattgatgatctggtgcactttgatttcatggatcct
cctgcccctgagacattgatgcgagcattggaggtgttgaattatttgggagcattggat
gatgaggggaacatgacaaagcttggggagatcatgagtgaatttcccttggatcctcaa
ctgtcaaagatgctcgttgtgagtcctgaattcaactgttcgaatgaaattctttcaatt
tcagccatgctttcagtacccaattgctttgtccgccctagggaggctcaaaaggctgcc
gatgaagcgaaggctaggtttgggcacattgatggggatcacctcacgctgctgaatgtg
tatcatgcatataagcaaaacaatgaggatccatcttggtgctatgaaaattttgtcaat
catagagcattgaaggctgctgacaatgtaagacaacagcttgtgcgtatcatggccagg
tttaacctcaagttatgcagcactgacttcaacagccgtgactactacatcaacataaga
aaagctatattagccggatacttcatgcaggttgctcaccttgaacgatctggacactat
ttgacagtgaaagacaaccaagtggtgcacctgcatccttcaaattgtttggatcacaag
ccagagtgggtgatatacaatgaatatgtcttgaccagccggaattatatacggactgtg
ctagacattcgtggggaatggttggtagacatagcaccacattactatgacttgcaaaat
ttcccgcaatgtgaggccaagcgggttcttgaaaagctttacaggaagcgggagagggag
agggaggagaacaggaacagaaaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (33)   

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