KEGG   Pangasianodon hypophthalmus (striped catfish): 113529371
Entry
113529371         CDS       T05759                                 
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
  KO
K13177  ATP-dependent RNA helicase DDX1 [EC:5.6.2.7]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:phyp03041]
    113529371 (ddx1)
   03016 Transfer RNA biogenesis [BR:phyp03016]
    113529371 (ddx1)
Enzymes [BR:phyp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     113529371 (ddx1)
Spliceosome [BR:phyp03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    113529371 (ddx1)
Transfer RNA biogenesis [BR:phyp03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    113529371 (ddx1)
SSDB
Motif
Pfam: DEAD Helicase_C SPRY ResIII CMS1 SNF2-rel_dom
Other DBs
NCBI-GeneID: 113529371
NCBI-ProteinID: XP_026774327
Position
Unknown
AA seq 740 aa
MAAFAEMGVMPEIAQAVEEMDWLLPTDIQAESVPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAVKTGGAVFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTQAVTKGKYYYEVSCHDQGLCRIGWSTAQAALDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDLDSGHVSFSKNGNDLGLAFEIPQNLRRQPFFASCVLKNAELKF
NFGGEPFKNAPKEGFIALDQAPDGHVVKTTQTGSATVSQVKSSSTAPKALIVEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLSILESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLTAGYTDFIMRVYNKIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVTVNPKNDRLWERLGKNHIRTDEVHAKDNTRPGAN
TAEMWSEAIKILKGEYTIRAIKEHKMDQAIIFCRTKIDCDNMEQYLIAQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKKEVRFLICTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEEGGCTIWYNEKELLG
EIEDHLKCTITQCEPDIKVPVDEFDGKVTYGQRRAAGGGLYKGHVDILAPTVQELANLER
EAQTSFLQLGYLPNQLFKAF
NT seq 2223 nt   +upstreamnt  +downstreamnt
atggctgcgtttgctgaaatgggagtgatgcctgaaatcgctcaggctgtggaagagatg
gactggctgcttcccaccgacatccaagccgagtccgttcccctgatcctcggcggagga
gacgttctcatggctgctgagacaggaagtggcaaaactggggccttcagcatcccagtg
atccagattgtgtatgagactctgaaagatcagcaggaggggaagaaaggccgtgctgca
gtgaagaccggaggagcagtgtttaataaatggcagatgaacccatacgaccgaagccca
gcatttgctatcgggccggacgggctttgctgccagagcagagagtttaaggagtggcat
ggctgccgttccacccaggccgtgactaaaggaaagtattactacgaagtctcgtgccat
gaccaaggcttgtgcaggatcggttggtccactgctcaggcagctctggatctgggtaca
gacaagtttggcttcggcttcggagggacggggaagaaatcccacaataagcagtttgat
agttatggagaggagttcactatgcacgacaccatcggatgctacatcgacctggacagt
ggccacgtgtccttctccaaaaatgggaatgatctgggcttggcgtttgagattccccag
aacttgagacgtcaaccgttcttcgcttcctgtgtgcttaagaatgctgaactgaagttt
aattttgggggagagcctttcaaaaatgcccccaaagaagggttcattgctctggaccaa
gcgcccgatggccacgtagtcaaaaccactcagactggcagtgccacggtgagtcaggtc
aaatcaagctccactgcccctaaagctctgatcgtggagccgtcgaaagaattggccgag
cagaccctcaacaacgtcaaccagtttaagaaatacgtggacaatcccaaactacgagat
ttgctgatcatcggaggcgtggcagccaaagagcagctgtccattttggaaagcggggtt
gatatagtggttggcacacccggcaggctcgatgatctcatatccacaggaaaactcgat
ctgtcccaagtccgcttcctggtcctggatgaatgtgatggactgcttacagccggctac
accgacttcatcatgagggtctacaacaaaatcccccaggtcacctctgatggaaagaga
ctgcaggtgattgtgtgctcggccaccctgcactcgttcgatgtgaagaaactgtcagag
aagatcatgcacttccccacgtgggtggacctgaaaggtgaagactccgtgcctgagaca
gtccatcatgtggtggtgaccgtcaaccccaaaaacgacaggctgtgggaaaggctgggc
aaaaaccatatccggactgatgaagtgcacgcgaaagacaacacgcggcctggagccaac
actgcagagatgtggtcagaggcaatcaaaatcctgaagggcgagtacacgatccgtgca
attaaggagcacaagatggaccaagccatcatcttctgcaggaccaagattgactgcgac
aacatggagcagtacctgatcgcacaaggaggaggtcctgataagaaagggcatcagttc
tcatgcgtttgtcttcacggtgacaggaagcccaacgagcgcaaatacaacttagagcgg
ttcaagaaaaaggaggtgaggtttttgatttgcacagacgtagcagccagaggaatcgac
gtccacggcgttccatacgtcattaatgtgaccttgccggatgagaaacagaattatgtg
catcgcatcggaagagtgggcagggcggagaggatgggtctggccatttctctggtggcc
atggaaaaggagaaggtatggtatcatgtttgtcctaacagaggccgaggctgctataac
accaggttaaaggaggaaggaggctgcactatatggtacaacgagaaagagctgttggga
gaaatcgaagaccacctgaagtgcaccattactcagtgcgagccggacatcaaagtcccc
gtagacgaatttgatggcaaggttacttacggccagcgtcgagctgctggaggtggtctc
tataagggccatgtggatattttggcccccacagtacaggaactcgctaacctcgagcgg
gaggcgcagacatctttcctgcaactgggctacctccccaatcagctcttcaaagctttc
tga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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