KEGG   Scheffersomyces stipitis: PICST_52941
Entry
PICST_52941       CDS       T01023                                 
Symbol
FAL1
Name
(RefSeq) RNA helicase involved in maturation of 18S rRNA
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
pic  Scheffersomyces stipitis
Pathway
pic03013  Nucleocytoplasmic transport
pic03015  mRNA surveillance pathway
pic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PICST_52941 (FAL1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    PICST_52941 (FAL1)
   03015 mRNA surveillance pathway
    PICST_52941 (FAL1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pic03019]
    PICST_52941 (FAL1)
   03041 Spliceosome [BR:pic03041]
    PICST_52941 (FAL1)
   03009 Ribosome biogenesis [BR:pic03009]
    PICST_52941 (FAL1)
   03012 Translation factors [BR:pic03012]
    PICST_52941 (FAL1)
Enzymes [BR:pic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PICST_52941 (FAL1)
Messenger RNA biogenesis [BR:pic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PICST_52941 (FAL1)
   mRNA cycle factors
    Stress granule specific factors
     PICST_52941 (FAL1)
Spliceosome [BR:pic03041]
 Complex C
  Other components
   EJC/TREX
    PICST_52941 (FAL1)
Ribosome biogenesis [BR:pic03009]
 Eukaryotic type
  90S particles
   Helicases
    PICST_52941 (FAL1)
Translation factors [BR:pic03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    PICST_52941 (FAL1)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Helicase_RecD AAA_30 nSTAND1 CMS1 AAA_22
Other DBs
NCBI-GeneID: 4851152
NCBI-ProteinID: XP_001387431
JGI: 52941
UniProt: A3GFV3
Position
1:1059236..1060435
AA seq 399 aa
MDDFDRDLDNELEFSHKSTKNVKVHATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQI
INGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDY
MNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADEL
FTKGFKEQIYEVYKYLPPSVQVVVVSATLSREVLEMTNKFTTDPVKILVKRDQITLEGIK
QYHVQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMK
QDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFG
RKGVAINLITKEDVATLRDFEKYYSTKIREMPMNINDIM
NT seq 1200 nt   +upstreamnt  +downstreamnt
atggacgatttcgacagagatttggacaacgaattggagttctcccacaagtccactaag
aatgttaaggtgcatgcgacttttgaaagcatgaacctcaagccagacctcttaaaaggc
atatatggctatggttttgaggctccttcagctattcagtcccgtgccatcatgcagatc
attaacgggagagatactattgcccaggctcaatcgggaactgggaaaacagccactttc
tccataggaatgctccaagccatagatactaatgccaaagactgtcaggcgctaattctt
tccccaactagagagttggcagttcagattcagaacgtcgttaaacatttaggtgactac
atgaacatccacacacatgcttgtataggaggaacgcatgtgggcgatgacatcaagaag
ttgaaacagggccaacagattgtgagtggaactccaggtagagtcgtggatatggtcaag
agacagcaattatccactagaaatatcaagatgttgattttggacgaagctgacgaatta
ttcaccaaaggtttcaaagaacaaatctacgaagtttataagtacttgcccccttcagtc
caggtggttgtagttagtgcaactctttcacgagaagtgttggaaatgaccaacaagttc
accacagaccctgtcaagattttggtgaagcgagaccagatcactcttgaaggtattaaa
cagtatcatgttcagtgtgagaaagaagactggaagtttgatacgttgtgtgatttgtac
gacaacttgaccatcacccaggccgtgatcttctgtaacaccaagctcaaagtcaactgg
ctcactgaccagatgagaaagcagaactttactgttgtgtctatgcatggtgacatgaaa
caggacgaacgtgactccatcatgaacgatttcagaacgggaaactcccgtgtgttgatt
tccaccgatgtgtgggccagaggaattgatgtgcaacaagtttcgctcgtgataaactac
gatttgcccactgataaagagaattatatacacagaatcggtagatccggaagatttgga
agaaagggggtagccatcaatttgatcactaaggaggatgttgctacgttgagagacttt
gagaagtattactcgacgaagatcagagaaatgcccatgaacattaacgatataatgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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