KEGG   Phytophthora infestans: PITG_09042
Entry
PITG_09042        CDS       T01333                                 
Name
(RefSeq) DEAD/DEAH box RNA helicase, putative
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
pif  Phytophthora infestans
Pathway
pif03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pif00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PITG_09042
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pif03019]
    PITG_09042
   03041 Spliceosome [BR:pif03041]
    PITG_09042
   03009 Ribosome biogenesis [BR:pif03009]
    PITG_09042
   03016 Transfer RNA biogenesis [BR:pif03016]
    PITG_09042
Enzymes [BR:pif01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     PITG_09042
Messenger RNA biogenesis [BR:pif03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     PITG_09042
Spliceosome [BR:pif03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    PITG_09042
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    PITG_09042
Ribosome biogenesis [BR:pif03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    PITG_09042
Transfer RNA biogenesis [BR:pif03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    PITG_09042
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 DUF6505 ATPase_2
Other DBs
NCBI-GeneID: 9462525
NCBI-ProteinID: XP_002903063
UniProt: D0NDS6
AA seq 1049 aa
MDEDLDLFGAFDDSSATLTAEEQAAASSTSSKRKEAPVASPNDDKALSPPAKKQQNDGRL
ASTTLKVVEGKRIDATPIEGNDKHSANVVSTGTQQKNLISFSVYPPDYDAQPTAGAAAKN
PAKTYPFTLDPFQQQAVDYIESGESVLVSAHTSAGKTAVAEYAIAKSLRDKQRVIYTSPI
KALSNQKYRDLEEEFGDVGLMTGDITINPSATCLIMTTEILRSMLYRGSEVMREVAWVIY
DEIHYMRDKERGVVWEESIILLPHKVRFVFLSATIPNSKEFAGWICHIHHQPCHVVYTDY
RPTPLQHYLFPAGGSGLHLVVDEKGKFREDNFQKAIATLSASTDDAAAELASYGSNTKRR
KAQKSNPKKKVGTDVFRIVKLIMERQYDPVIIFSFSKRECEAYALLMSKLDFNTEEEKQS
VDQLFKNAMDSLSDDDRALPQVDSILPLLRRGIGIHHGGLLPILKEVIEILFGEGLLKCL
FATETFSMGLNMPAKTVVFTNCRKYDGKDFRWITAGEYIQMSGRAGRRSLDARGIVIQML
SEQMEPQVAKGILYGQADPLFSTFHLGYNMLLNLMRVEDADPEYMIKQSFHQFQNEQAAP
ALEEALERAKEEKDQIVIKNEEEVAQYYYLSRSLVRLKEEFLAIRNKPDHVTRFLNGGRL
VKLYSPDSDDGTSKPKWDWGVIVNFTTKNASDSTCATPDTVVHVLLNCLNNSNVTSNDAT
NGSTVAELPTPAPENMMGLSTSATYEMKICPVPLEMLDLISSLRVYIPKDLRTLESRQAV
GKSVKEVLRRFPQGVPLLDPREDLDIQDEQFLRVIEKTVDAEKQLKSSPFHNAADKEARF
ALYNLKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDKEGVIQRKGRTACE
VSTTDELLVTEMIFNGQFNDLSVNDAVALLSCLINTEKKKESDKPPQAESLEVPVRQLRE
TAQRIAKVMQDAKMTIDVDEYAGAFNTNLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCL
RRLEELLRQLTLAAHSIGADMSFAASLYL
NT seq 3150 nt   +upstreamnt  +downstreamnt
atggatgaggacctggacttgttcggcgcgttcgacgactcgtccgcgacgctgacagcc
gaggaacaagccgccgcttcttccacttctagcaagcgcaaagaagctcccgttgcctct
ccgaatgacgacaaggcgttgtctccgcctgctaagaagcagcagaatgacggtcgtcta
gcctccaccactctcaaggtcgtggagggcaagcgcatcgacgcaacgcccatcgaaggc
aacgacaaacactctgcaaacgttgtgtccaccggcacgcagcagaagaacctcatctcg
ttctcagtgtatccgccagactacgacgctcaacccacagccggcgcagcagccaagaac
cctgccaagacgtacccattcactctagacccattccagcagcaggctgtggactatatt
gagtctggagagtccgtattggtctctgcccacacgtcagccggtaaaacagctgtggcc
gagtacgcaattgccaaaagtcttcgagacaaacagcgcgtcatctacacgtccccaatt
aaagctctaagtaaccaaaagtaccgcgacttagaagaagagttcggagatgtgggtctt
atgacgggtgatatcacaattaacccatccgccacgtgtctgatcatgacgacggagatt
ctacgaagcatgttgtatcgaggctccgaggtcatgcgagaagtggcgtgggttatttac
gatgagatccactacatgagagacaaggaacgcggtgttgtatgggaggagagtatcatt
ctactgccacacaaagtccggtttgtgtttctatcggctactatccccaactccaaggag
ttcgctggctggatctgtcacatccaccaccaaccgtgtcacgttgtgtacacagactac
cgtcctacccctttgcagcactacctcttccccgctggaggtagtggcctccacttggtc
gtcgacgagaagggcaaattccgcgaagataacttccaaaaggccattgcgacgttgtca
gcgtctaccgatgacgcagctgcagaattggcgtcctacgggagtaacacgaagcgacgt
aaagcgcagaagagcaatcccaagaagaaagtgggcaccgacgtgttccgtatcgtcaaa
ctcatcatggagcgtcaatatgacccggtgattatcttctcgttcagtaaacgggagtgt
gaggcgtacgcgttgctcatgtccaagctggatttcaatactgaagaggagaaacagtcg
gtggatcagctctttaagaacgctatggactcgctatcagacgacgatcgtgctctacca
caagtagattccattctaccgctactgcgtcgtggtatcggtatccatcacggtggttta
ctgccgattctgaaggaagtgatcgagattctctttggtgaagggctactgaagtgtctg
tttgctaccgagacgttctctatggggttgaatatgcctgcaaagaccgtagtgttcaca
aactgccggaaatatgacggcaaggacttccgttggatcactgctggcgagtacattcag
atgtctggacgtgccggtcgtcgctcgcttgatgcgcgtggtatcgtcatccaaatgctg
agtgagcagatggaaccgcaagtggccaaaggaatcctctacggtcaagcagatccgctg
ttcagtacgttccatcttggctacaatatgctgctgaacttgatgcgagtggaagatgcc
gacccggaatacatgatcaagcagtctttccatcaattccagaacgaacaggccgcccct
gctcttgaagaagcgctggaacgtgcgaaagaagagaaggaccagatcgtgatcaagaac
gaagaagaagtggcgcagtactactacttgtcgaggtctctggtgcggctcaaagaggaa
tttctggccatccgcaacaaaccggaccacgtgactcggttccttaatggagggcgcttg
gtgaagctctacagtcctgacagcgacgacggcaccagtaaacccaagtgggattggggt
gtgattgtcaacttcacgaccaagaacgccagtgactcgacttgtgccactccagacacg
gtagtgcacgtgctgttgaactgtctgaacaacagcaacgtcacgagcaatgacgccacg
aatggcagcaccgtcgccgagctaccgacccccgcacctgagaacatgatgggactgtcg
actagtgcgacttacgagatgaagatctgccctgtcccattggagatgctggacctcatc
tcgtctctacgtgtgtacatccccaaggacttgcgtactcttgagagtcgtcaagcagtg
ggcaagtcggtcaaggaagtgctacgtcgattccctcagggtgtcccgcttctggatcct
cgtgaagatttggacattcaggacgaacaattcttgcgtgtgattgagaagactgtggac
gcagagaagcaactcaagagctcgccgttccacaatgcagcggacaaggaagcgcgcttt
gcattgtacaatttgaagatggaaagtgaagccaagatgcgcgaattggagcgcaagatc
aaggagtccaagtcgctggtgctgcgtgatgacttgcgtcgtcgtcgacgagtgttgagg
agactggagtttgtggataaagaaggagttatccaacggaagggacgtacggcgtgtgaa
gtctcgacgacggacgagctgctggtgacggagatgatcttcaatggccaattcaacgac
ctgtcggtgaacgatgcggtggcgctgctgagctgtttgatcaacacggagaagaagaag
gagagcgacaaacctcctcaagctgagagtctggaggtccccgttcgacaactacgtgag
acggcgcagcgtatcgccaaggtgatgcaagacgccaagatgacgatcgacgtggacgag
tatgcgggtgcgttcaacacgaacctggtggatgtggtcattgcctggtgccaaggagcc
aagttctcgcagatctgcaagatgtcggacgcgtttgaaggcaccatcattcgctgtcta
cgtcgactagaagagctgctgcgtcagctgacactggctgcgcactcgattggcgcggac
atgtcctttgcagcttctctttatctgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (71)   

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