KEGG   Planococcus sp. Y42: B0X71_03880
Entry
B0X71_03880       CDS       T04763                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pmar  Planococcus sp. Y42
Pathway
pmar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B0X71_03880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmar03019]
    B0X71_03880
   03009 Ribosome biogenesis [BR:pmar03009]
    B0X71_03880
Enzymes [BR:pmar01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     B0X71_03880
Messenger RNA biogenesis [BR:pmar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     B0X71_03880
Ribosome biogenesis [BR:pmar03009]
 Prokaryotic type
  rRNA helicases
   B0X71_03880
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1 Terminase_6N
Other DBs
NCBI-ProteinID: AQQ52332
UniProt: A0A1Q2KXD5
Position
750058..751503
AA seq 481 aa
MNETSFNNYGLSDEIQKALKLLKYTALTEVQREVIPQALKKRDLVVRSQTGSGKTAAFGI
PVCEMIEWEEKKPQALVLTPTRELAVQVREDLANIGRFKRINPVAVYGKEPFAKQKEELK
QKTHIVVGTPGRVSDHIERGTLALDGIRYLIIDEADEMLNMGFIEEVEAIIKQLPADRVT
MVFSATLPENVEKLCYKYMTDPVNIQIASEDVTVSAIDHSVIEVKEEQKMNVLKNVTVIE
NPDSAIIFCRTKDHVDSVYAELEESGYSVEKLHGGLVQEDRFAVMEGFKLGNFRYLVATD
VAARGIDVDNVTLIINYDVPVEKESYVHRTGRTGRAGNTGKAITLALAHEGRLLRSIENY
IGFPIPAAEAPAPHEAAKAQAAFDEKMDSRRVVRNNKTARVNKDILKLHFSGGKKKKLRA
VDFVGTIAKIPGVSADDIGIITVQDNLTYVDILNGKGALVLQTMQNTPVKGKKLKVSKAV
K
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgaatgaaacaagctttaataattacggattgagcgatgaaatccaaaaagcgctcaaa
ctgctgaagtacactgcattgacagaagtccaaagggaagtcatcccgcaagcgctcaaa
aagcgggatcttgttgtaagatcccagacggggagcggcaagactgcggcgttcggcatt
ccggtatgtgaaatgatcgaatgggaagagaaaaagccacaggcgcttgttctgacaccg
acgcgtgaactggcggttcaagtgcgggaagatctcgcgaatatcgggcgcttcaagcgg
atcaacccggtggcggtctacggcaaagagccgtttgccaaacagaaagaagagctgaaa
cagaagacgcatatcgttgtcggaacgcctggccgggtcagtgaccacattgaacgcgga
acgcttgcgcttgatggcatccggtatttgatcatcgacgaagcggatgaaatgctcaat
atgggcttcatcgaagaagtggaagcgatcatcaagcaattgccggcagatcgggtcacg
atggtgttttctgcgacattgccggagaatgtggaaaaactctgctataaatacatgacc
gatccggtgaatatccagatcgcttcagaagacgtgacggtcagtgcaatcgaccacagt
gtcattgaagtgaaagaagaacagaagatgaatgtgctgaaaaacgtgacggtcattgag
aatccggacagtgccatcatcttctgccggacaaaagaccatgtcgactcggtctatgcc
gaacttgaagagtccggctacagcgtggaaaaactccatggcggccttgtgcaggaagac
cggttcgctgtcatggaaggctttaaactcggcaatttccgctatttggtggcgactgac
gtagcggcccgtggaattgatgtagacaatgttacgctcatcatcaattacgatgtgccg
gtcgaaaaagaaagctatgtccaccgcaccggacggacgggcagagccggcaataccggt
aaagcaatcacgctggcattagcacacgaaggccggctgttgcggtcaatcgagaattac
atcggctttccaatccccgcagctgaggcaccggctccgcatgaagcggcaaaagcgcaa
gctgcgtttgatgaaaaaatggacagccgccgggttgtccggaacaataagactgcacgg
gtgaataaggatattttgaaacttcacttcagcggaggcaaaaagaaaaagctccgtgcc
gtcgattttgttggcaccatcgctaaaattcccggggtgtccgcggatgatatcggtatc
atcaccgttcaggataacctgacatacgtcgatatcctgaatggcaaaggggcgcttgta
ttgcagaccatgcaaaacacgccggtcaaagggaagaaactgaaagtcagtaaagcagtt
aagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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