KEGG   Prochlorococcus marinus MIT 9301: P9301_12081
Entry
P9301_12081       CDS       T00488                                 
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pmg  Prochlorococcus marinus MIT 9301
Pathway
pmg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    P9301_12081 (srmB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmg03019]
    P9301_12081 (srmB)
   03009 Ribosome biogenesis [BR:pmg03009]
    P9301_12081 (srmB)
Enzymes [BR:pmg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     P9301_12081 (srmB)
Messenger RNA biogenesis [BR:pmg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     P9301_12081 (srmB)
Ribosome biogenesis [BR:pmg03009]
 Prokaryotic type
  rRNA helicases
   P9301_12081 (srmB)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 AAA_22 P-loop_SecA AAA_30 SWI2_SNF2 UvrD-helicase Sacchrp_dh_NADP Flavi_DEAD MJ1010-like_2nd
Other DBs
NCBI-ProteinID: ABO17831
UniProt: A3PDK6
Position
complement(1021486..1023267)
AA seq 593 aa
MAFKKDSNSLGSEQENSQNDDSSLLEFKNLDNKKEIESQLLEVSKGEDNDNGFLEFGFNQ
SILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNKELN
AKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDVVVGTPG
RIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPNEI
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTK
LLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIK
LVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNLREKHFLRNLENSTRTKIEEINIPS
NKIINEKRMEKLIDSFNESSLAKDENEENKALIIDVLDNLKEKYSMDDSNIAMAAINLVI
GNKSFFVNDDDSWINKQNNTDRNRSNRNNNNRMRNSSRRNNYQNDSFETYKFNFGKFDGV
RVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLHRETKNKLKKIKVRN
NT seq 1782 nt   +upstreamnt  +downstreamnt
atggcttttaaaaaagatagtaactctcttggtagtgagcaggaaaactctcagaatgac
gattcttctctactagagttcaagaacttagataacaaaaaagaaattgaatctcaacta
ttggaagtatctaagggagaagataatgacaatggatttctcgaatttgggtttaatcaa
tcgatcttaaactcgttaataaataaaggatataaaaatccaactcccatccaaaaagct
gcaattcccgaactaatgttaggcagggatttattaggccaagcacaaacaggaacagga
aagactgcagctttcgcattaccattaatagaaaaacttacagataataaagaattaaat
gccaaggttttagttatgactcctacaagagaattagcaactcaagtggcagaatccttt
aaaagttatagttctgaatctagtaattttaagacggttgcaatatatggaggtaccgac
tatcgaaatcaaatttctgcattaaaaagaaaagttgacgtagtagttgggaccccaggc
cgaataatggatcatataaggcagggtacttttaaaattaaagatataaattgtcttgtt
ttagatgaggcagatgaaatgttaaatatgggttttcttgaagatattgaatggataata
gatcaacttccggaaaataagcagatggtattgttttcagcaacaatgcctaatgagata
agaaatatagcaaaaaaatatctaaatgatcccgccgaaatattaatcaaaagtgtcaaa
aaagaaactcaattaatttctcaaaaatttctatatgttcaaagacatcataagttagat
gctttaaaaagaatactagaacttaataacgagggagtaattatttttgttaggacaaaa
ctacttactacttcaatcgctgaagctttagagaattcaggtcatactgtggcagtactt
aatggagatatacctcaaaatcaaagagaaaatactgtagatagattgaaaaaaggattt
attaatattcttgttgcaactgatgtcgcagctaggggattagatgttgagaggataaaa
cttgttgttaattacgattttccttttgacaaggaaacatatactcatagaattggaaga
actggaagggcaggcagatcaggagaagcaattttattcgttaatctaagagaaaaacat
tttctaagaaacttagaaaattcaacaagaaccaagattgaagaaattaatataccaagt
aataaaataataaatgaaaaaaggatggagaaacttatagatagttttaatgagagttct
ttagctaaagatgaaaatgaagaaaataaagctttgattattgatgtactagataattta
aaagaaaaatactctatggatgactcaaatattgcaatggcggctattaatttagtaata
ggtaataaatcattttttgttaatgacgatgattcttggattaataaacaaaataatact
gatcgaaatagatcaaatagaaataataataaccgtatgagaaattcaagtagaagaaat
aattatcaaaatgattcttttgaaacctacaaatttaactttggtaaatttgatggagtt
agagttgcaaatattatatcctcaatctgtaattcaactaatataaatggtagatccata
ggtaagatacagatttttaatgattacagtttggtagatttaccaagagatctgcataga
gaaactaaaaataaattaaaaaaaattaaagtaagaaactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (25)   

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