KEGG   Raoultella sp. X13: DSD31_02985
Entry
DSD31_02985       CDS       T05540                                 
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
rao  Raoultella sp. X13
Pathway
rao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DSD31_02985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rao03019]
    DSD31_02985
   03009 Ribosome biogenesis [BR:rao03009]
    DSD31_02985
Enzymes [BR:rao01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     DSD31_02985
Messenger RNA biogenesis [BR:rao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DSD31_02985
Ribosome biogenesis [BR:rao03009]
 Prokaryotic type
  rRNA helicases
   DSD31_02985
SSDB
Motif
Pfam: DEAD Helicase_C DbpA DeaD_C ResIII CMS1 AAA_22 DRTGG
Other DBs
NCBI-ProteinID: AXC28495
UniProt: A0A808XF94
Position
600809..602776
AA seq 655 aa
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
IETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERSGE
DRPKRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPDRGGERRGGGERREGGRAFGGERREG
GRNFGGGERREGGRGDGRRFSGERRDGARAPRRDDAAAAPRRDDSAGRRRFGGDA
NT seq 1968 nt   +upstreamnt  +downstreamnt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcccatccttgaagcg
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgcattccgcatctt
ctgggcggccgcgacgttctgggtatggcccagacgggtagcggtaaaaccgcagcgttc
tctttaccgctgctgaacaatcttgatcctgagctgaaagcaccgcaaattctggtgctg
gcgccgacccgcgaactggcggtacaggtcgctgaagcaatgacggacttctctaaacat
atgcgcggcgtaaacgtggtagccctttacggcggccagcgttatgacgtgcagctgcgt
gctctgcgccagggaccacaaatcgttgtgggtaccccgggtcgtctgctggaccacctg
aagcgcggtactcttgatctctctaaactgagcggtctggtactggatgaagctgacgaa
atgttgcgtatgggcttcatcgaagacgtagaaacgattatggcgcagatcccggaaggt
catcagaccgctctgttctctgccaccatgccggaagcgatccgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcatccagtccagcgtcacgactcgcccggacatc
agccagagctactggactgcttacggtatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaatgcgaccctggaa
gtggctgaagcgctggagcgtagcggctacaacagcgccgcgctgaacggcgacatgaac
caggcgctgcgtgagcagactctggagcgtctgaaagatggtcgtctggatatcctgatt
gcgaccgacgttgcggctcgtggcctcgacgttgagcgtatcagcctggttgttaactat
gatatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggccgcgcgctgctgttcgttgagaaccgtgaacgccgcctgctgcgtaacatc
gaacgcaccatgaagctgacgattccggaagtagaactgccgaacgcagaactgctgggc
aaacgccgcctggaaaaatttgccgctaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgctgaaggtgaagagctggat
atcgaaactctggccgcagctctgctgaaaatggctcagggcgaacgtccgctgattctg
ccgccggatgcaccgatgcgtcctaagcgtgaattccgcgaccgtgacgatcgtttcgag
cgccgtggcgaccgcaacgaccgtggcccgcgtggcgaccgtccggagcgtagcggtgaa
gatcgtcctaagcgcgaacgtcgtgacgtgggcgatatggagctgtatcgcattgaagtg
ggccgcgatgatggcgttgaagttcgtcatattgttggcgctatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgttcggtacccactccacgatcgaactg
ccgaaaggcatgccgggcgaagttctgcagcacttcactcgtactcgcatcctgaacaag
ccgatgaacatgcagctgctgggcgatgctcagccgcgtccggaccgtggcggcgaacgt
cgtggcggtggtgagcgccgtgaaggcggtcgcgcattcggtggcgaacgtcgtgaaggc
ggccgcaacttcggtggtggcgagcgtcgcgaaggcggccgtggtgatggtcgtcgtttc
agcggcgaacgtcgtgacggtgctcgtgctccgcgtcgtgatgatgccgctgcggctccg
cgccgtgatgattccgctggccgtcgtcgtttcggtggcgatgcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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