KEGG   Cupriavidus metallidurans: Rmet_2336
Entry
Rmet_2336         CDS       T00351                                 
Symbol
virD4
Name
(GenBank) VirD4, Type IV secretory pathway, VirD4 components
  KO
K12071  conjugal transfer pilus assembly protein TraD
Organism
rme  Cupriavidus metallidurans
Brite
KEGG Orthology (KO) [BR:rme00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:rme02044]
    Rmet_2336 (virD4)
Secretion system [BR:rme02044]
 Type IV secretion system
  Conjugal transfer pilus assembly protein
   Rmet_2336 (virD4)
SSDB
Motif
Pfam: TraG-D_C TrwB_AAD_bind DUF87 TniB
Other DBs
NCBI-ProteinID: ABF09213
UniProt: Q1LKW3
Position
2548986..2551175
AA seq 729 aa
MSGKQPVEVLLRPAVELYTVAACAGAAFLCLVAPWSLALSPAMGIGSALAFGAYGAIRYR
DARIILRYRRNIRRLPRYVMTSKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYV
EPTPAYRLTRRLEERLEFAPLPLSRLPKLTGWDAPFNPVRPLPPVGGLPRLHGIEPDEVD
VSLPLGERVGHSLVLGTTRVGKTRLAELFVTQDIRRRNAAGEHEVVIVIDPKGDADLLKR
MYVEAQRAGREGEFYIFHLGWPEISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREF
AWRFVNIIARALVELGQRPDYMLIQRHVINIDALFIEYAQHYFAKTEPKAWEVIVQIEAK
LNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSAVRYDKTYFDKIVASLLPLLE
KLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSD
LVSVAGHIYKHGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAY
TQTLSDIEARIGNRAKAGQVIGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGAT
DSSDIRGATDFTSNTQDRISMASVPMIEPSHVVGLPKGQCFALLQGGQLWKVRMPLPAPD
PDEVMPTDLQQLAGYMRQSYSEATQWWEFTSSAALPHAALPDDLLDDAAPAEPDAVATGA
DDSTGEAAP
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgtcgggcaaacagccggtcgaggttctgctacgcccagcggtggagctatacaccgtc
gcggcgtgtgcaggcgccgcgtttctgtgcctggtggccccatggtcgctcgcgctgagc
ccggccatgggcatcggcagcgccttggcgttcggcgcctacggcgcgatccgctaccgc
gatgcccgcatcatcctgcgctaccggcgcaacatccgccgtctgccgcgttacgtgatg
accagcaaggacgtgccggtcagccagcagcgcctattcgtggggcgcggctttctctgg
gagcagaagcacacgcatcggctgatgcagacgtaccggcccgagttccgccgctacgtc
gagccgacgccggcctaccggctgaccaggcgcctggaggaacggctggagttcgcgcca
ttgccgctctcgcgcctgccgaagctcaccggctgggacgcgcctttcaaccccgtgcgc
ccgttgccgcctgtcggcggcctgccaaggctgcacggcatcgagcccgacgaagtggac
gtcagcctgccgctgggcgagcgcgtcgggcactcgctggtgctgggcaccacgcgggtg
ggcaagacgcgcctggccgagttgttcgtcacgcaggacatccgtcgcaggaatgctgcc
ggcgagcatgaggtcgtcatcgtcatcgaccccaagggggatgccgatctcttgaaacgg
atgtacgtcgaagcccagcgcgctggccgcgaaggcgagttctacatcttccacttgggc
tggccggaaatcagcgcccgctacaacgccgtgggccgcttcggtcggatctcggaagtg
gcgacacgcatcgcggggcagctctccggcgaaggcaacagcgcggcgttccgcgagttc
gcatggcgcttcgtgaacatcatcgcccgcgccctggtggaactggggcagcgcccggac
tacatgctgatccagcgccacgtcatcaacatcgacgcgctgttcattgagtacgcccag
cactactttgccaagacggagcccaaggcctgggaggtgatcgtccagatcgaggccaag
ctcaacgagaagaacatcccaaggaacatgatcgggcgcgagaagcgtgtggtggcgctg
gagcaatacctctcccaggcgcgcaactacgaccctgtgctcgatggcctgcgctcggcg
gtgcgctacgacaagacctacttcgacaagatcgttgcatcgctgctgccgctgctggaa
aagctcacgagcggcaagatcgcccagctcctggcgccgaactactccgacctggccgac
ccgcgcccgatcttcgactggatgcaggtgatcaggaagcgcgccgtcgtctatgtcggc
ttggacgcgctgtccgatgcggaggtcgccgcagcggtcggcaactcgatgttcagcgat
ctcgtctcggtggctgggcacatctacaagcacggaatcgacgatggcctgccgggcgca
tcggctggtgcgcgcgtgccgatcaacgtgcatgcggacgagttcaatgaattgatgggt
gacgagttcattccgctcatcaacaagggcggtggcgcgggcctgcaagtcaccgcctac
acgcaaacgctttcggacatcgaggcccgcatcggcaaccgcgcgaaggccggccaagtg
atcgggaatttcaacaatttattcatgttgcgcgtgcgcgagacggccaccgcggaactg
ctgacgaggcagttgccgaaggtcgaggtctatacgaccaccatcgtctcgggcgcgacg
gacagctcagacatccgcggcgcgacggacttcacgtcgaacacccaggaccgcatcagc
atggccagcgtgccgatgatcgagccgtcacacgtcgtcggtctgcccaagggccaatgc
ttcgcgctgctgcagggcggccagctttggaaggtgcgcatgccgcttccggcgccagac
cccgatgaagtgatgccgacggacttgcagcaactggccgggtatatgcgccagagctac
agcgaggccacgcagtggtgggagttcaccagttccgcagccttgccgcatgcagccttg
cccgacgacctgctggatgacgccgctccagccgagcctgacgcggtggccaccggcgcc
gacgacagcaccggcgaggccgcaccatga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (7)   

Download RDF
DBGET integrated database retrieval system