KEGG T01003: 29657

Rattus norvegicus (rat): 29657

Entry

29657             CDS       T01003

Symbol

Bmal1

Name

(RefSeq) basic helix-loop-helix ARNT-like protein 1

K02296

aryl hydrocarbon receptor nuclear translocator-like protein 1

Organism

rno Rattus norvegicus (rat)

Pathway

rno04710

Circadian rhythm

rno04728

Dopaminergic synapse

Brite

KEGG Orthology (KO) [BR:rno00001]
09150 Organismal Systems
  09156 Nervous system
   04728 Dopaminergic synapse
    29657 (Bmal1)
  09159 Environmental adaptation
   04710 Circadian rhythm
    29657 (Bmal1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    29657 (Bmal1)
Transcription factors [BR:rno03000]
Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    29657 (Bmal1)

SSDB

Motif

Pfam:

PAS_11 PAS PAS_3 HLH PAS_9 Per3-like_PAS-A PAS_4 bHLH_INO2 PAS_2 bHLH_NCOA bHLH_NPAS4 PAS_8

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

RGD:

Ensembl:

UniProt:

Position

1:176766222..176864741

AA seq 626 aa
MADQRMDISSTISDFMSPGPTDLLSGSLSTSGVDCNRKRKGSATDYQESMDTDKDDPHGR
LEYAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQ
HMKTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKIL
NYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLC
SGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDE
DSEPDNEGCNLSCLVAIGRLHSHMVPQPVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAI
LAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRW
FSFMNPWTKEVEYIVSTNTVVLANVLEGGDPTFPQLTASPHSMDSMLPSGEGGPKRTHPT
VPGIPGGTRAGAGKIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKI
LNGGTPDIPSAGLLPGQAQETPGYPYSDSSSILGENPHIGIDMIDNDQGSSSPSNDEAAM
AVIMSLLEADAGLGGPVDFSDLPWPL

NT seq 1881 nt +upstreamnt +downstreamnt
atggcggaccagagaatggacatttcctccacaatcagtgacttcatgtctccgggcccc
accgacctgctctccggttccctgagcaccagtggtgtggactgcaaccgcaagaggaaa
ggcagtgccactgactaccaagaaagtatggacacagacaaagatgaccctcatggaagg
ttagaatatgcagaacaccaaggaaggatcaaaaatgcaagggaggcccacagtcagatt
gaaaagaggcgtcgggacaaaatgaacagttttattgacgaattggcttctttggtacca
acatgcaatgcgatgtcccggaagttagataaactcaccgtgctcaggatggctgttcag
cacatgaaaacattgagaggtgccaccaacccatacacagaagcaaactacaagccaaca
tttctatccgatgacgaactgaaacacctaattctcagggcagcagatggatttttgttt
gtcgtaggatgtgaccgagggaagatcctctttgtctccgaatctgtcttcaagatcctc
aattatagccagaatgaccttattggccagagtttgttcgactacctgcatccaaaagat
attgccaaagttaaggaacagctatcttcctcggacactgcacctcgggagcgactcatc
gatgcgaagactggacttccggttaaaacggatataacccctgggccctcccgattgtgc
tctggagctcggcgctctttcttctgtaggatgaagtgcaacaggccttcagtaaaggtg
gaagataaggacttcgcctccacctgttcaaagaaaaaagcagatcgaaagagcttctgc
acaatccacagcacaggctacttgaaaagctggccacccacaaagatggggctggacgaa
gacagtgaaccagacaatgagggctgcaatctgagctgcctcgttgcaatcgggcgactg
cactcacacatggttccacagccagtgaacggggaaatacgggtgaagtctatggagtat
gtgtctcgacatgcaatagatgggaaatttgtttttgtagatcagagggcgacggctatt
ttggcatatctaccacaggaacttctaggtacatcgtgttatgagtattttcatcaagat
gatataggacaccttgcggaatgtcacaggcaagttttacagacaagagaaaagatcacg
actaattgctataagtttaagatcaaagatggttcctttatcacactacgaagtcgatgg
ttcagtttcatgaacccgtggaccaaggaagtagaatacattgtctcaaccaacactgtt
gttttagccaatgtcctggaaggcggggacccaaccttcccacagctcacagcatccccc
cacagcatggacagcatgctgccctctggagaaggtggcccaaagaggactcatcccact
gttccaggcattccagggggaaccagagctggagcaggaaaaataggtcgaatgattgcc
gaggaaatcatggaaatccacaggataagagggtcatcaccttccagctgtggctccagc
ccactgaacatcacaagtacgcctccccctgatgcttcctctccaggaggcaagaagatt
ctaaatggagggactccagacattccttccgctggcctactaccagggcaggctcaggag
accccaggctatccctactctgatagttcgtctattcttggtgagaacccccacataggc
atcgacatgatagacaacgaccaaggatcaagcagccccagtaacgacgaggcagcaatg
gctgtcatcatgagcctcttggaagcagatgcggggctgggtggtcccgttgactttagt
gacttgccatggccactgtag

All links

Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (18)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (14)   
DNA sequence (46)   
   RefSeq(nuc) (14)   
   GenBank (16)   
   EMBL (16)   
Protein domain (12)   
   Pfam (12)   
All databases (81)   

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