KEGG   Streptococcus dysgalactiae subsp. equisimilis ATCC 12394: SDE12394_07580
Entry
SDE12394_07580    CDS       T02017                                 
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
sdg  Streptococcus dysgalactiae subsp. equisimilis ATCC 12394
Pathway
sdg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sdg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SDE12394_07580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdg03019]
    SDE12394_07580
   03009 Ribosome biogenesis [BR:sdg03009]
    SDE12394_07580
Enzymes [BR:sdg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SDE12394_07580
Messenger RNA biogenesis [BR:sdg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SDE12394_07580
Ribosome biogenesis [BR:sdg03009]
 Prokaryotic type
  rRNA helicases
   SDE12394_07580
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Helicase_RecD DUF1924
Other DBs
NCBI-ProteinID: ADX24962
Position
complement(1478204..1479823)
AA seq 539 aa
MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLF
SATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPE
LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMIENLTKK
QMKPLRPATAEEAFQAKKKVALKKIERDFADDAIRSNFDKFKGDAIQLAAEFTPEELALY
ILSLTVQDPDSLPEVEIAREKPLPFKYVGGGHGNKNGKGGRGRDNRNRGDRRGGYRGDRN
RDERDGDRRRQKRDKRDGHDGSGNRDFKRKPKRNAKDFFNKEKKSSPKNTGFVIRHKGE
NT seq 1620 nt   +upstreamnt  +downstreamnt
ttgaaatttacagaatttaacttatcagaagacatccaatcagctgtcgttaccgctggt
tttgagaaagcatctcctatccaggaaatgacgattcctctcgcactagaagggaaggat
gttattggtcaggcacaaacaggaactggtaaaacagcagcgtttggtctaccaaccttg
aataagattcgtactaacgaaaatatcatccaagcattggtcattgcaccaacgcgtgaa
ttggctgtacaaagtcaggaagaattgttccgttttggacgtgaaaaaggggttaaggtt
cgctctgtttacggtggatcaagtattgaaaaacaaatcaaagcccttaaatcaggtgca
cacattgtcgtgggaacaccaggccgcttgttagatttgattaagcgcaaggctcttatt
ttagatcatgtggaaaccttaatccttgatgaagcagatgagatgcttaacatgggattc
ttggaagacattgaagctattattagtcgtgtcccagcagaccgtcaaaccttgctcttc
tccgcaacgatgccagcacctattaaacaaatcggggtaaaattcatgaaagaccctgag
catgttcaaattaagaacaaagaattaaccaacgtgaatgttgatcaatactatgtccgt
gtgaaggaacaagaaaaatttgataccatgacacgtttgatggatgttaaccaacctgaa
ttatctattgtttttggtcggactaaacgtcgtgttgatgagattacacgtggtctaaaa
ttacgtggtttccgtgccgaaggaatccatggtgatctagaccaaaataaacgcttacgc
gttatccgtgatttcaaaaacgatcaaattgatattcttgtagccactgatgtggcagca
cgtggtcttgatatttcaggagttacccacgtttataactacgatattacccaagatcca
gaaagttatgttcaccgtattggccgtactggtcgtgcgggtaaatcaggtgagtcaatc
acttttgtctcaccaaatgagatgggctacctctcaatgattgagaacttaacgaaaaaa
cagatgaaacctctccgcccagcaactgcagaagaggctttccaagccaagaaaaaagta
gcccttaaaaaaattgaacgtgattttgcggatgatgctattcgttctaactttgacaaa
ttcaaaggagatgctatccaattagcagctgaattcactccagaagagttggcattgtat
attttgagcttaacggttcaagatccggatagcttaccagaagtggaaattgcgcgtgaa
aaaccattaccattcaagtatgtgggtggtggccatggcaataaaaatggcaaaggtggt
cgtggacgtgacaaccgtaaccgcggagaccgccgtggtggctatcgtggcgaccgtaac
agagatgagcgtgatggtgatcgtcgtcgtcaaaaacgtgataaacgtgacggtcatgat
ggcagtggcaatcgtgatttcaaacgtaaaccaaaacgtaatgctaaagattttttcaat
aaagaaaagaaatcaagccctaaaaacactggatttgtgattcgtcacaaaggtgaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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