KEGG   Seriola dumerili (greater amberjack): 111219132
Entry
111219132         CDS       T05606                                 
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
  KO
K13131  ATP-dependent RNA helicase DDX20 [EC:5.6.2.7]
Organism
sdu  Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sdu03041]
    111219132 (ddx20)
Enzymes [BR:sdu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     111219132 (ddx20)
Spliceosome [BR:sdu03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    111219132 (ddx20)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 CMS1
Other DBs
NCBI-GeneID: 111219132
NCBI-ProteinID: XP_022597447
Position
Unknown
AA seq 793 aa
MASSVRRAAHDIETRKRTDDVLLSDGIDFGSLLLSPAVLDGLSAAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKPHLKKCHVAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPANKQMLALSATYPESLAKHLTRYMREPTFVRLNPSDMGLKG
LKQYYKLVQSHPLPHRVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLTQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGLSLSALPSTIEPGLMDEPCDWDVCI
EASTPSSLSKLVSRSEKKKKPAAAAAAASITDQAVEHSGPTKPEKTHPTPRRGAHVEGNA
RTVSPTQTVQTRKQLQDALPKIPPLSSFKNCRSRFMTFEEAEQDFQSFITTGLGRTVEVI
REFRGREDDSPSNQNGHRESVTLNDDGAQNLTRSREQWKANFSPPRSVSSSSSSQLDTEE
KQQDNETVGSSNHTRGRECRAVMQSQTDARNTPTVPGPKSNPKAYPTSAPKIYHQTTGAS
NWRALSQPESYDPTRGTDSNRETNQAAPPQTGRNESRKMKEEIRKRSKKCSEKMDRERKR
DRNEGEQDEEGEEEEEECSAEIYWRACYRAWNDYYASMSPFQEQGYQSYYSVAHNWMAAY
RMNAVYMEELLKH
NT seq 2382 nt   +upstreamnt  +downstreamnt
atggcttcctccgtgaggagagcagcccacgacatagaaacgcgaaagcggaccgatgat
gtccttctgtcggatgggatcgacttcgggtccctgctgctgtctccggccgtgctggac
ggactgtccgccgcaggctttcagaagccctccccgatccagctcaaggccatcccgcta
ggccgctgcggacttgatttgattgtacaggccaagtctggcacgggaaagacatgtgtg
ttctgcaccatcgccctggactctctggtcctggagaatcctgcgactcaggttcttgtg
ttggctcctacacgtgagatagcagtgcagatccactcagtagtgatggccataggctgt
gccatggaaggcctggagtgccatgtttttattgggggcaggcctgtgagtcaggacaaa
ccccacctgaagaagtgccatgtagctgtgggctcacctggtcgtatcaagcagcttatc
gagctgggcatgttgtcgaccgccagcatcagactgtttgttctggatgaggcagacaag
ctgctggaggagggcagcttccaggagcagatcaactggatcttctcctctctacctgca
aacaagcagatgcttgcgctctctgccacctacccagaatcccttgcgaagcaccttacc
cgctacatgagagagcctacctttgttagactcaatcccagtgacatgggccttaaaggt
ctgaagcagtattacaagctggtgcagtcccatccgttacctcacagggttttcgaggag
aaggtgcagcacttactagagctgttcagtaaaatcccattcaaccaggccctggtgttc
tccaacctacacacaagggctcaacacctggcagacatcctgtcctccaaaggcttacct
gctgtttgtatctcaggtggtctgactcaggaccagaggctggaggcgatgtcaaaactg
aagcagtaccagtgcagggtgctcatctccactgacttgacttccagaggtatagatgca
gagaaagtcaacttggtgataaacctggacgtgccgcaggactgggaaacctacatgcac
agaatcggacgggcaggacgcttcggcactcaggggctggctgtgacctactgttgccat
ggtgaggaggagaacaagatgatggccattgctcaaaagtgcggcttgagtttatccgca
ttgccatccaccatagagcctgggttgatggacgagccatgtgactgggatgtctgcatt
gaggcctccactccaagctccttatcaaagcttgtctccaggtcagagaagaagaagaaa
cctgctgctgctgctgccgccgcctccatcacagaccaagctgtagagcatagtggacca
acaaagccagagaaaacccatccaacacccaggcgtggagcacatgttgaagggaatgct
agaactgtatctcctactcagacggtgcagactcgaaagcagctgcaagatgctctaccg
aagatccctcctctcagctcgttcaagaattgcaggtcaaggtttatgacctttgaggag
gctgagcaggacttccagagcttcattaccacagggttggggagaacagtggaggtcatc
agagagttcagaggtcgagaggacgatagccccagtaatcagaacgggcatagagagtct
gtcacacttaatgacgacggagctcaaaatttaacacggagtagagaacagtggaaagct
aacttttcacctccaaggtcagtttctagttcttcaagctcccaattggacacggaggag
aagcagcaggataatgagacagtgggaagttcaaatcacaccagaggaagagaatgcaga
gcagtgatgcaatctcagactgatgctagaaacacaccaactgtgcccggaccaaaatca
aatcccaaagcttatcctacttctgcgcccaaaatatatcaccagacaactggtgcatca
aattggagagctttgtctcagcctgagagctatgatccgacgcgtggtacagattcaaac
agggaaaccaatcaggccgctccgccacagactggcagaaatgaatcaagaaagatgaaa
gaagagattaggaaacggagcaaaaagtgctcagaaaagatggatagagagagaaagagg
gacaggaacgaaggagaacaagatgaagaaggagaggaggaggaggaggagtgcagcgct
gaaatttactggagagcctgctacagagcctggaatgattactacgcctccatgtctcct
tttcaagaacaaggctaccaaagctactacagcgtagctcacaactggatggcagcttat
cgtatgaatgctgtctacatggaagaactcctgaaacactga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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