KEGG   Serratia sp. MYb239: CLM71_02070
Entry
CLM71_02070       CDS       T05477                                 
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
serm  Serratia sp. MYb239
Pathway
serm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:serm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLM71_02070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:serm03019]
    CLM71_02070
   03009 Ribosome biogenesis [BR:serm03009]
    CLM71_02070
Enzymes [BR:serm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CLM71_02070
Messenger RNA biogenesis [BR:serm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CLM71_02070
Ribosome biogenesis [BR:serm03009]
 Prokaryotic type
  rRNA helicases
   CLM71_02070
SSDB
Motif
Pfam: DEAD Helicase_C DbpA DeaD_C ResIII CMS1 DRTGG UTP25
Other DBs
NCBI-ProteinID: AVJ16010
Position
440399..442255
AA seq 618 aa
MTTELETSFADLGLSAPIISALNDLGYVKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDMYRALLAKLQPEEELEME
TLAAALLKMAQGERPLILPPDPVFKPRKPREFNDRDDRRGDRRDGDRPRRERRDVGEMQL
YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEILNHFTRT
RILNKPMNMQLLGDAQPHDRRERRDGGNRRPFNGERREGGPRRSFGERREGGNAAGNGER
RGGNANRERAPRRRFGDA
NT seq 1857 nt   +upstreamnt  +downstreamnt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gctctgaacgacctgggctatgttaagccatcacctattcaggctgagtgtattcctcac
ctgttgaacggccgcgatgtgctgggtatggcacaaaccggcagcggcaagactgcggcg
ttctcgctgccgctgttgcacaatatcgacgcttctctgaaggcaccgcaaatcctggtg
ctggcgccaacccgcgaactggcggtacaggttgctgaagcgatgaccgatttctccaaa
cacatgaacggcgtaaacgtcgtggccctgtacggcggccaacgttacgacgtacagctg
cgcgccctgcgtcagggcccacaaatcgtggtgggtaccccaggccgtctgctggaccac
ctgaagcgcggtaccctgaacctctctaacctgagcggtctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgttgaaaccatcatggcggaaatcccggct
gaacatcagaccgcgctgttctccgccaccatgccggaagcgattcgccgcatcacccgc
cgctttatgaaagagccgcaggaagtgcgcatccagtccagcatcaccacccgtccggac
atcagccagagctactggacggcgtacggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagcggaagactttgatgcggcgattatcttcgtgcgcaccaaaaacgcgacgctg
gaagtggcagaagcgctggagcgtaacggctacagcagcgccgcgctgaacggcgacatg
aaccaggcgctgcgtgagcagaccctggagcgcctgaaggacggccgcctggatatcctg
atcgccaccgacgttgcggcgcgtggtctggacgttgagcgtatcagcctggtggtaaac
tacgacatcccgatggacgcagaatcttacgttcaccgtatcggtcgtaccggccgtgcc
ggtcgtgccggtcgcgcgctgctgttcgtggaaaaccgcgaacgtcgcctgctgcgcaac
atcgagcgcaccatgaagctgaccatcccggaagttgaactgccgaatgcagaactgctg
ggcaaacgccgtctggagaaattcgcggctaaagtacagcagcagttggaaagcagcgat
ctggatatgtaccgcgctctgctggcgaaactgcagccggaagaagagctggaaatggaa
acgctggccgccgcgctgctgaaaatggcgcagggtgaacgtccgctgatcctgccgccg
gatccggtgttcaagccgcgtaaaccacgtgagttcaacgatcgtgatgatcgtcgtggc
gatcgtcgtgacggtgaccgtccgcgtcgcgagcgtcgtgacgttggcgaaatgcagctg
taccgcattgaagtgggtcgtgatgacggtgtagaagtgcgtcacatcgtaggcgctatc
gccaacgaaggcgacatcagcagccgttacatcggtaacatcaagctgtttggttcccac
tccaccatcgagctgccaaaaggcatgccgggcgagatcctgaatcacttcactcgcacc
cgcattctgaacaagccgatgaacatgcagctgctgggtgatgcacagccgcacgatcgt
cgcgagcgtcgcgacggcggcaaccgtcgtccgtttaacggcgaacgtcgtgaaggcggc
ccacgtcgttctttcggcgagcgtcgtgaaggcggtaacgcagccggcaacggcgagcgt
cgtggcggtaacgctaaccgtgagcgcgcaccacgtcgtcgtttcggcgacgcataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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