KEGG   Acidilutibacter cellobiosedens: EQM13_17090
Entry
EQM13_17090       CDS       T05805                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
spoa  Acidilutibacter cellobiosedens
Pathway
spoa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spoa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EQM13_17090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spoa03019]
    EQM13_17090
   03009 Ribosome biogenesis [BR:spoa03009]
    EQM13_17090
Enzymes [BR:spoa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     EQM13_17090
Messenger RNA biogenesis [BR:spoa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     EQM13_17090
Ribosome biogenesis [BR:spoa03009]
 Prokaryotic type
  rRNA helicases
   EQM13_17090
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 Helicase_RecD
Other DBs
NCBI-ProteinID: QAT63161
UniProt: A0A410QGQ3
Position
complement(3544102..3545691)
AA seq 529 aa
MRKMKFEDLNLSEEVIKSVSDMGFEEASLIQSQAIPYILEGKDVIGQAQTGTGKTSAFGI
PIIEMYSGKDKILQAIVLCPTRELSIQVAEEIKKLAKYKKDFYVLPVYGGQPIERQIKSL
KKGVQVVVGTPGRVIDHLNRHTLKVENIKMVVLDEADEMFDMGFRDDIELILGKMPEERQ
TVFFSATMSNEIMKFAKQFQKDPKFIKVVHKELTVPEVEQYYFELKQNMKTEVLSRLIDI
YNPKLSLVFCNTKKGVDDLVMELQGRGYFVDGLHGDLKQTQRDKVMGRFRSGNIDILVAT
DVAARGIDVDDIDIVFNYDIPHDEEYYVHRIGRTARAGKSGKAFSFAVGRDIYRLKDIQK
YTKTKITRQEIPTLTDVKEVRTNILIEKIKKIMEKDELSYYKKIVDSLLQDEYDSVDIAS
AVLKLYIGEDKQQKDDEINEKKFKVDSSKMVRLYINVGKKKNVSPRHIIGAITEETGISG
RLIGKIDVYDKFTFVEVPEELKDEILTRLQKKKIRGNKINIEVANPRRK
NT seq 1590 nt   +upstreamnt  +downstreamnt
atgaggaaaatgaaattcgaagatttaaatttatcagaagaagtaataaagtcagtatct
gatatgggatttgaggaggcatctcttattcaatcccaagcaataccatatattttagaa
gggaaagatgtgataggccaggctcaaacgggaaccgggaagacatcagcttttggaata
cctattattgaaatgtacagtggaaaggataaaatacttcaagcaattgttttgtgtcct
acaagagaactttccatacaagtagcagaagagattaaaaaacttgctaaatataaaaaa
gatttttatgttctccctgtatatggggggcaacctatagaaagacaaattaaaagtttg
aaaaaaggagttcaggtagtagttggtacacccgggagagttatagaccacttaaataga
catacattgaaagttgaaaatataaaaatggtggttttagatgaagcagacgagatgttt
gacatggggtttagagatgacattgaacttatattaggtaagatgccggaagagaggcaa
accgtatttttttccgcaactatgtccaatgaaataatgaaatttgctaagcaatttcag
aaagatcctaaattcataaaggtagtgcacaaggaactcactgttcctgaagttgaacaa
tattattttgaattaaagcagaatatgaaaacagaagtattatcaaggcttatagatata
tataatccaaaactttctttggttttttgcaatacaaaaaaaggcgtagacgatttagtt
atggaacttcaaggcagaggatattttgtagacggacttcacggggatttaaagcaaact
caaagagacaaggttatgggtaggtttaggagcggaaatattgatattcttgtagcaacg
gatgtagcggcgaggggtatagatgtagatgatatagatattgtatttaattatgatatt
ccccatgatgaagaatattatgttcatagaataggaagaacagcaagggccggaaaatcc
ggaaaagcatttagttttgcagtgggaagagatatatacaggttaaaagatattcaaaag
tatactaaaactaaaattactcgtcaagaaattcccactttaactgatgttaaggaagta
agaacaaatatccttatagaaaaaatcaagaagataatggagaaggatgaattatcctac
tataaaaagatagttgactctctgttacaagatgaatatgattccgtagatattgcttct
gcagtactgaagctttatataggagaagataagcaacaaaaagatgatgagataaatgaa
aagaagtttaaagtagattcttcaaagatggtaaggttatatataaatgttgggaagaag
aaaaatgtaagcccaagacatattatcggagcaataactgaagaaacgggtatttcggga
agattgataggtaaaattgatgtgtacgataaattcacctttgtcgaagtacctgaagaa
ttaaaagatgaaatactcaccagattacaaaaaaagaaaataagaggaaataaaataaat
atagaagttgcaaatccgagaagaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system