KEGG   Streptococcus parauberis: STP_0139
Entry
STP_0139          CDS       T01504                                 
Name
(GenBank) hypothetical protein
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
stk  Streptococcus parauberis
Pathway
stk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:stk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    STP_0139
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stk03400]
    STP_0139
Enzymes [BR:stk01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     STP_0139
DNA repair and recombination proteins [BR:stk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     STP_0139
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 UvrD_C_2 SH3_13 Viral_helicase1 AAA_11 DEAD AAA_22 AAA_12 HHH_5 AAA nSTAND3 Herpes_Helicase UvrD-helicase AAA_16 RsgA_GTPase AAA_28 TsaE AAA_18 SLFN-g3_helicase T2SSE Zeta_toxin AAA_5 NACHT NTPase_1 UvrD_C
Other DBs
NCBI-ProteinID: AEF24587
Position
complement(155418..157841)
AA seq 807 aa
MEYFFSGTVDRIIFENSSNFFKILNLMIEDTDSDFDDFEIIITGTMADIMEGEDYTFWGQ
LSQHPKYGQQLQLSRYQRAKPSSSGLIKYFSSDHFKGIGKKTAERIVSLYGDNTIDKILD
DPSKLEDINGFSKANREAFVAKLRINYGTEQIIAALVELGLSNRMAFQIYDQYKEEAVER
VRTNPYQLVEDIQGIGFKMSDKLAQEIGIADSAPERFRAALLHSLLEQSISQGDTYIEAR
DLLAYAIDLLEDSRQIECNPAQVAQELSHLISDEKVYNAGTKIFDASLFTAEEGIKNQLQ
RLLDTPFEKQISQDKIEKEVQAIEKEFAISYDQVQKDAIYQALTSKVFILTGGPGTGKTT
VIRGILEAYARINDIDLNKKDLPIVLAAPTGRAARRMNELTGLPSATIHRHLGLNGDNDY
QAMEDYLDCDLLVVDEFSMVDTWLANQLLGAISSNTQIIIVGDSDQLPSVGPGQVLADLL
KITSLPQIALRKIFRQSADSTIVDLANQMRQGILPVDFRDKKADRSYFDAMPQHVPTMVT
KIVASAVKSGIPADEIQILAPMYKGQAGINNLNQLMQELLNPLDNGTEFVFNEIHFRKGD
KVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDEIMMDFDGSEVTYPRNEWLKITLAY
AMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAVTRSKSKLILLGEHSAFDYAIKNEG
DKRKTFLVQRFDQDLTTESSDQLVKIDTVENSSDSLGQAQNTIAKPLESEEPTILTTANM
LSIDPLIGLTDADFKNFFKNRQFIVDK
NT seq 2424 nt   +upstreamnt  +downstreamnt
atggaatactttttttccgggactgttgatcgcatcattttcgaaaatagcagtaacttt
tttaaaatcttaaacctaatgattgaagataccgacagtgactttgatgactttgaaatc
atcattactggaaccatggctgacatcatggagggagaagattataccttctgggggcaa
ttaagccaacatcccaaatatggccaacaactgcaactcagccgttaccagcgagctaaa
ccaagttcatctggtctaatcaagtacttttccagtgatcattttaaaggaattgggaaa
aagaccgccgagagaattgtctctttatacggtgacaatacgattgataaaattcttgac
gaccctagtaagttagaggatatcaacggcttttcaaaagctaaccgagaagcctttgta
gctaagctaagaatcaattacggaacagaacaaatcatcgctgcactggtagaattagga
ttgtctaatcggatggccttccaaatatacgatcaatataaagaagaagctgtcgaacgg
gttaggactaatccctatcaactcgtagaagacatccaaggcatcggctttaaaatgtct
gataaattagctcaggaaatcggtatagctgattctgcacctgaacggtttcgggctgct
ctattacatagtttattggaacaatcaattagccaaggtgatacctacatcgaggcgcgt
gatttattagcctatgctattgatttgttagaagactctcgacaaattgaatgtaatcct
gcgcaagttgcccaagaattaagtcatttaatttctgatgaaaaagtttataatgcaggt
actaaaatatttgatgcctctctatttacagctgaagagggaattaaaaatcaacttcaa
cgtttgctagataccccatttgagaaacaaatcagtcaagataagattgaaaaagaagta
caagcaattgagaaggaatttgccattagctatgatcaggtccaaaaggacgcaatttat
caagcattgaccagcaaggtctttatcttaactggtggtccaggtactggtaaaacaacc
gttatcagaggaattctagaagcttatgctcggattaatgacattgatttaaataaaaaa
gatttaccgattgttctagcagcgcctactggtcgagctgctcgtcggatgaatgaatta
actggcctaccaagtgccactattcatcgtcatttaggcttaaatggtgacaatgattac
caagccatggaagactacttagactgtgatttattagttgttgatgaattttctatggtt
gatacttggttagccaatcaattattaggtgccatatcatcgaatacccaaataatcatt
gttggtgacagtgaccagttaccgtctgtaggaccaggtcaggttctagcagatcttttg
aaaattaccagtctaccacaaatcgcccttcgtaaaattttccgtcaatcagctgattca
accatcgttgatttggcaaatcaaatgcgtcaaggcatattgccagtagattttcgagat
aaaaaagcagaccgttcttactttgatgccatgcctcaacatgttccaaccatggtcaca
aaaattgtcgcttctgctgttaaaagtggtatcccagctgatgaaattcagattcttgct
cccatgtataaaggacaagcaggcatcaacaatctcaatcagcttatgcaagagcttctc
aatccattagataatggtacagaatttgtctttaatgagatacattttcgaaagggagat
aaagtcttacacttagttaatgatgcccaattgaatgtctttaatggtgatattggttac
attacagatttaattccagccaagtacaccgagtccaaacaagatgaaattatgatggat
tttgatgggtcagaagtaacttatcctcgcaatgaatggttaaaaatcaccttggcctat
gccatgagtattcataagtcgcaggggagtgagttccaagtggttattcttccaatcacc
cgccagagtgggcgcatgcttcaacggaatctgatttatacagctgtcacaaggtcaaag
agtaaattaattttactgggtgagcactcagcttttgattatgcaatcaaaaatgagggt
gataaacgaaaaactttcctagtgcaacgatttgaccaagacctgacaacagaatcaagc
gaccaattagtaaaaattgatacagttgaaaacagttcggacagtcttggacaagcccaa
aatactattgcaaagcccttagaatctgaagagccaacgattttaacgacagcaaatatg
ttatctattgatccactgattggcttgactgatgctgatttcaaaaatttttttaaaaat
aggcaatttatagtggacaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (27)   
   Pfam (27)   
All databases (36)   

Download RDF
DBGET integrated database retrieval system