KEGG   Sebaldella termitidis: Sterm_1120
Entry
Sterm_1120        CDS       T01123                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
str  Sebaldella termitidis
Pathway
str03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:str00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sterm_1120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:str03019]
    Sterm_1120
   03009 Ribosome biogenesis [BR:str03009]
    Sterm_1120
Enzymes [BR:str01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Sterm_1120
Messenger RNA biogenesis [BR:str03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Sterm_1120
Ribosome biogenesis [BR:str03009]
 Prokaryotic type
  rRNA helicases
   Sterm_1120
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 ERCC3_RAD25_C Flavi_DEAD AAA_30
Other DBs
NCBI-ProteinID: ACZ07988
UniProt: D1AFV3
Position
1226274..1227866
AA seq 530 aa
MNDKSFLDLGVSEATLKALDKKGFTSPSAIQTLVIPELLKERTNLIGQAQTGTGKTAAFA
IPILETLDCDGSVRAIVLAPTRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQIKKIK
KGIDVIVGTPGRILDLMNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNEDKKM
LFFSATIPDSIMKIAKKFMKDYKLLKVKTKELTTNLTEQIYFEVTEGDKFEALCRVLDYV
HDFYGIVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVATD
VAARGIDVNDLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKISKIQRL
TKTDIKKEKIPKIEEVISVKKENLYACVEEIEKEEDFGYYTGMAKELLGDKDPEVVLASL
LRHMYDDEFLPESYNEISEVKTGRGLNANNAGDDKTRLFIALGKKDGYTPGKLLDLLNKK
AKTPGRKVRDIKIMDNFSFITVPLREAEFIMKALNKSNKNKPLVEKAKKK
NT seq 1593 nt   +upstreamnt  +downstreamnt
atgaacgataaaagctttttagatttgggagtgagcgaagcaacacttaaagcacttgat
aaaaaaggatttacatctccgagtgctattcagacacttgtaattcccgaacttttaaaa
gaaagaacaaatttgataggacaggctcagacagggacaggaaaaacagcagcatttgct
ataccgattctggaaacactggattgtgacgggagcgtaagagcgatagttctcgcacca
acaagagagctagccaatcaggtggcagatgaaatgtattctttaaggggtaaaaaagaa
ataaaggtgctacctgtttacggcggacagtcaattgaccagcagataaaaaagataaaa
aaaggaatagacgtaatagtaggaactccggggagaatactggacttaatgaacagaaag
gttataaagcttaataatcttgaatattttgtactggatgaagctgatgaaatgcttaat
atgggatttatagaggatatagaactgattcttgagagaacaaatgaagataaaaaaatg
ctgtttttctcggctacaatacctgattctataatgaaaatagctaaaaaattcatgaag
gactataaattactaaaggtaaaaacaaaagagctgactactaatcttactgagcagatt
tattttgaagtaaccgaaggggataaatttgaggctttatgcagagttttggactatgtt
catgatttttacggaattgtattctgcagaacaaaatcagatgtggatgatgtagcacag
cacttgaaaggaagaggctacgatgctgaagctatacatggtgatataactcaggcaatg
agaatgaaaacacttgaggattttaagaaaaagagaataaatatccttgtggctacagat
gtggcagcaagaggaatagatgttaatgatcttacgcatgtaattaactactcaataccg
caggagcctgaatcatacgttcacagaataggaagaacaggaagagcagggaaaaaggga
atagcaataacattcgttacacctaaggaagcttcaaaaatttccaaaatacaaagactt
acaaaaacagatataaagaaagaaaaaatacctaagatagaagaagtaatcagcgtaaaa
aaagaaaatctttatgcctgtgtggaagagatagaaaaagaggaagatttcggttactac
acaggtatggcgaaggaacttctgggagataaagatcccgaagtagttttggcttcactt
ttaagacatatgtacgatgatgagtttcttcctgaaagctataacgaaatttcggaagta
aaaactggaagaggtctgaacgctaataatgccggtgacgataaaacaagactatttata
gctcttggtaaaaaagacggttatactccggggaaattactggatttattaaataaaaaa
gctaaaactccaggaagaaaagtacgtgatataaagataatggataatttttcttttatt
acagtacctttgagagaagctgaatttataatgaaagcacttaataaaagcaataaaaac
aagccgcttgtagaaaaagcaaaaaagaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (26)   

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