KEGG   Shewanella woodyi: Swoo_4426
Entry
Swoo_4426         CDS       T00676                                 
Name
(GenBank) primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
swd  Shewanella woodyi
Pathway
swd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:swd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Swoo_4426
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:swd03400]
    Swoo_4426
Enzymes [BR:swd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Swoo_4426
DNA repair and recombination proteins [BR:swd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Swoo_4426
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD ResIII Helicase_C PriA-like_WH PriA_CRR AAA_30 TrwB_AAD_bind DUF5816 zinc-ribbons_6 HypA
Other DBs
NCBI-ProteinID: ACA88678
UniProt: B1KK47
Position
5360935..5363130
AA seq 731 aa
MSLFVEVALPVPMRQTFSYKIPETLTTPPKKGARVKVPFGRQQLIGLVTGTTDTCHLAPN
QIKPLIELIDEEPLLPDSLYKLTAWAARYYFCSLGQMMSQALPVALRKGAEVQADTSTFW
RVTAAGSAASLDAIKRAPAQRKVLEQLQKAELSQEEMAALNFSKSAIKALQDRDWITKDE
RINKIDLSWRDNLVLGEDPLTLNPEQAIAVATLNQQSGYHCTLLEGITGSGKTEVYLSLL
ESVLKQGKQALILVPEIGLTPQTISRFKSRFNVTVAVIHSGLTDNQRLTAWRLAKTGEAA
IIIGTRSALFTPMAFPGTIILDEEHDSSFKQQEGVGYHARDLAVMRGHLEKIPVLLGTAT
PSLESLQNALSGRYKHLELGQRAGNAEKVRQGIIDISNQPLKTGLSHALLNEMRIHLDAG
NQVLLFLNRRGFAPALLCHDCGHLHECDRCDAFFTVHQSLGEIRCHHCGNQYAIPRQCHN
CGSTMLMGQGVGTEQLATVLEKEFPKYPVVRIDRDTTSRKGSLENHLNAIHKGEYKILVG
TQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGRARKPGTVLMQT
HQADNAVLRELMHKGYGEFARGQLNERKQALLPPAWNMLLLRAEANQAIDADNFLSSVAQ
LLPQDEECEVIGPMPAPMDKKAGKYRRHLIFQTKSRQALQQAFEFALPQIEALPLAKRCR
WSIDRDPQDLL
NT seq 2196 nt   +upstreamnt  +downstreamnt
atgtccctgtttgtcgaggttgcccttcccgtacctatgcggcaaacctttagctataaa
atacctgagaccctgacgactccacccaagaaaggtgctcgagtcaaagtcccctttggc
cgccaacaactgattgggctggtgacaggcactactgacacttgtcatttggcaccgaac
caaattaaaccgctaattgaactcattgatgaagagccattacttcctgattcactttat
aaactaacagcttgggccgcaaggtactacttctgtagtttaggtcaaatgatgtctcaa
gcgctacctgttgccctacgaaaaggggctgaggtccaagcagataccagcacattttgg
cgcgtaacagctgcgggaagcgctgcttcacttgacgcaataaaacgtgcaccagcccag
agaaaagtactagagcaattacaaaaagctgagctatcccaagaggagatggcagcgctt
aactttagtaagtcggccattaaagcgcttcaagatagagactggataacgaaagatgag
cgcattaataagatagatctttcatggcgtgacaacttagtgttaggcgaagatccacta
acattaaatcccgaacaggccattgctgtcgccaccttaaaccagcaaagcggctatcac
tgcaccttgcttgaggggataactggctcaggtaaaactgaggtttacctctctctactc
gaatccgttttaaagcaaggtaaacaggcattaattttagtacctgaaatagggttaacc
ccacaaactattagccgtttcaaaagccgctttaatgtcactgtcgctgttatccactca
ggactcaccgataaccagagactcaccgcctggcgcctggctaaaaccggtgaggcagcc
atcattatcggcacacgctctgcactatttaccccgatggcatttcccggcacgattatt
ctcgatgaggagcatgattctagcttcaagcagcaagagggagttggctaccacgctcgc
gatcttgcggtcatgcgaggacacctcgaaaagatcccagtccttctgggcacggcaacg
ccctcattggagagcctacaaaacgcccttagcggccgctacaaacacctagagttaggt
caaagagcgggtaatgcagagaaagtacgccaagggatcatagatattagtaatcaaccc
ctaaagacgggtctttcccatgcgctgctcaatgagatgcgtatccatctcgatgctggc
aatcaggttttactctttctcaaccgaagaggatttgctccagcgctactatgtcatgat
tgcggccatctgcatgagtgcgatagatgcgatgcctttttcacagtgcatcaatcttta
ggcgagatacgctgtcaccattgcggtaatcaatacgcaatcccaagacagtgtcataac
tgcggtagcaccatgttaatgggacaaggtgtgggcacagagcaacttgctactgtattg
gaaaaagagtttcctaagtaccctgttgttcgtatcgatcgtgacacaacgagccgaaaa
ggatcactggagaaccaccttaatgcgatccataagggcgaatataagatattagttggc
acacagatgctagcaaaaggccatcacttccccgatgtcaccttagtcggcttactggat
gtagacggtgcgctatttagtgcagattttagagcccctgagcgctttggtcagctctac
acccaagtatctggccgagcaggtcgtgcaagaaagcccggcacagtgctgatgcaaacc
catcaggcagataatgccgttttgcgtgagctgatgcataaagggtacggcgaatttgcc
agaggccagctcaatgagcgtaaacaagccttgctcccacctgcctggaatatgttgctg
ctgcgagcggaagcgaatcaagctatcgatgccgataattttctctccagcgttgcccag
ttgctgccacaggatgaggagtgcgaagtcattggccctatgcctgctccaatggataaa
aaggcaggtaaatatcgacgccacctgatattccagactaagtctcgccaagctttgcaa
caagctttcgagttcgcactacctcaaatagaggcgttgccattagctaaacgttgccgc
tggagcatagatagagatcctcaagatctcctctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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