KEGG   Tarenaya hassleriana (spider flower): 104815234
Entry
104815234         CDS       T04125                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 2-like
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
thj  Tarenaya hassleriana (spider flower)
Pathway
thj03013  Nucleocytoplasmic transport
thj03015  mRNA surveillance pathway
thj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:thj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104815234
  09122 Translation
   03013 Nucleocytoplasmic transport
    104815234
   03015 mRNA surveillance pathway
    104815234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thj03019]
    104815234
   03041 Spliceosome [BR:thj03041]
    104815234
   03009 Ribosome biogenesis [BR:thj03009]
    104815234
   03012 Translation factors [BR:thj03012]
    104815234
Enzymes [BR:thj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104815234
Messenger RNA biogenesis [BR:thj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104815234
   mRNA cycle factors
    Stress granule specific factors
     104815234
Spliceosome [BR:thj03041]
 Complex C
  Other components
   EJC/TREX
    104815234
Ribosome biogenesis [BR:thj03009]
 Eukaryotic type
  90S particles
   Helicases
    104815234
Translation factors [BR:thj03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    104815234
SSDB
Motif
Pfam: DEAD Helicase_C AAA_19 ResIII AAA_30 CMS1 AAA_22 Flavi_DEAD Helicase_RecD
Other DBs
NCBI-GeneID: 104815234
NCBI-ProteinID: XP_010541855
Position
Unknown
AA seq 402 aa
MAAANVAHPGRGGGGRRGGGALDDDKLVFETTEGVEPITSFDHMGIKEDVLRGVYDYGFE
KPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQIVDTSSREVQALILSPTRELA
SQTERTIQAIGLHANIQAHACIGGKSXVHVVSGTPGRVCDMIKRRSLRTRAIRLLILDES
DEMLSRGFKDQIYDVYRYLPPDLQVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLE
GIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSEKMRSNNFTVSSMHG
DMPQKERDEIMNQFRSGESRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG
RFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq 1209 nt   +upstreamnt  +downstreamnt
atggcagcggcgaacgtagcgcatcctggccgtggaggcggcggccggaggggcggagga
gcactggatgacgacaagctcgtctttgagacgacggagggggtcgagcccatcacgagc
ttcgatcacatggggatcaaggaggatgtgcttcgcggcgtctacgattacgggttcgag
aagccctccgcgattcagcagagggctgtgatgccgattctacaaggtcgcgacgttatc
gctcaggctcaatctggtacagggaagacctccatgattgcgctctcggtttgccaaatc
gtcgacacctcgtccagggaggttcaggccttgatattgtccccaacaagagagctggct
tcacaaacagagaggacgatacaggctattgggttacatgcaaatattcaggcacatgcc
tgcattggtggcaagagcngagtccacgttgtgtctggaactcctggtagagtctgtgac
atgataaagaggaggagtctacgtaccagagccattagactattgattcttgatgaatca
gatgaaatgctgagcagaggattcaaagatcaaatttacgatgtttatagatatcttcca
ccggatcttcaggttgtcttggtttctgctactcttcctcatgagattttggagatgaca
aacaagtttatgacggatcctgtgaggatacttgtgaagcgtgatgagttgactcttgaa
ggaatcaaacaattttttgtggctgttgagaaagaggaatggaaatttgataccctgtgt
gatctttatgatacacttactatcactcaagctgttattttctgcaacacgaaacgaaag
gtggattggcttagtgagaagatgaggagtaacaatttcactgtctcatcgatgcacggg
gacatgcctcagaaggagagagatgaaatcatgaatcagtttcggtctggtgaaagccgt
gttctgatcacgacagatgtgtgggcacgaggaattgatgttcaacaagtttctcttgtc
atcaattatgatctacccaataatcgtgagctttacatccatcggattggacgttctggt
cgttttggtcgcaagggagttgcgattaactttgtaaagagcgacgacatcaagatcctg
agggacatcgagcagtattacagtacacagatagacgagatgccgatgaatgtggcagat
cttatctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (66)   

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