KEGG   Tuwongella immobilis: GMBLW1_46690
Entry
GMBLW1_46690      CDS       T06428                                 
Name
(GenBank) dead deah box helicase : DEAD/DEAH box helicase domain protein OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1620 PE=3 SV=1: DEAD: Helicase_C
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
tim  Tuwongella immobilis
Pathway
tim03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tim00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GMBLW1_46690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tim03019]
    GMBLW1_46690
   03009 Ribosome biogenesis [BR:tim03009]
    GMBLW1_46690
Enzymes [BR:tim01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GMBLW1_46690
Messenger RNA biogenesis [BR:tim03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     GMBLW1_46690
Ribosome biogenesis [BR:tim03009]
 Prokaryotic type
  rRNA helicases
   GMBLW1_46690
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-ProteinID: VTS06409
UniProt: A0A6C2YT05
Position
1:5074416..5075810
AA seq 464 aa
MSDEKSLEPEASLPPEPLPAGTTPPGEVVPENPVLESTSEPALESAADELASEPSAPETV
EYASLPLHPELHASIARLGYVKATPIQSAVIPVALQGKDVIGQAQTGTGKTAAFLIPFLN
RWREDVHPGPQAIILAPTRELVAQVAEEGKKLAPSPKCKIVPIYGGAGMRSQVDALRAGC
AVVVGSPGRVLDHLSRGTLKLDQVWYAVLDEADRMLDIGFRPDIEKILRKCPSDRQTLLM
SATMSATVLRLVHRYMVEPTHLSMTPTTLTVDRIRQSFFTVDESRKFELLVRVILRERPR
QCIIFCQRKKSSDRLHRDLSRIFESVAVMHGDLAQSQRERIMKRFRTRHIRCLIATDVVS
RGIDVSGISHIFNYDLPDDLENYVHRIGRTGRMGKDGIAISFVRPDQGKQLTSIEASINR
LISEDRIPGYVAFDRPPDAPAPASPPPPPAPRFGGRGRRYSKRI
NT seq 1395 nt   +upstreamnt  +downstreamnt
ttgtcggacgaaaaatcattggaacccgaagcgagcctaccaccggaaccgcttcctgcc
ggcaccactccaccgggagaagtcgttcccgaaaatcccgtattggaatccacctcggaa
cccgccttggaatctgccgctgacgaactcgccagcgaaccatcggcccccgaaaccgtg
gagtatgcctcgcttccgcttcaccccgagctgcacgcttccattgcccggctcggctat
gtgaaggcgaccccgattcaaagtgctgtcatcccggttgcgttgcaaggcaaagacgtc
atcggccaagcccaaaccggcaccggaaaaaccgccgcgttcttaattccgtttctcaat
cgctggcgagaagatgttcaccccgggccgcaagccatcattctcgcccccactcgcgag
ttagtcgcccaagttgccgaagaaggcaagaagctcgctcccagccccaagtgcaagatt
gtccccatctacggcggtgccgggatgcggtcgcaagtcgatgccctaagagcaggttgc
gccgttgtcgtcggtagccccggtcgcgtcttggaccacctcagccgtggcacgctcaaa
ctcgaccaagtctggtacgccgtgctcgatgaagccgaccgcatgctggacatcggcttc
cgacccgacatcgaaaagattcttcgcaaatgccccagtgatcgtcagacactgctcatg
tcggcgaccatgtcggccaccgtgctgcgcttggtgcatcgctacatggtggaaccgacc
cacctgagcatgaccccgaccacgctgaccgtggatcgcattcggcaatcgttcttcacg
gtagacgaaagtcgcaaattcgaactattggtgcgcgtgattctccgcgaacgcccgcgc
cagtgcatcatcttctgccaacggaagaaatcgtcggaccgattgcaccgcgatctgtct
cgaatcttcgaatcggtggcggtcatgcacggcgacttggcccaaagccaacgcgaacga
atcatgaagcgattccgcacccgccatattcgctgcctgattgccaccgacgtggtgagc
cgtggcatcgacgtgtccggcatctcgcacatcttcaattatgatctgccggatgacctg
gaaaactacgttcaccgcattggccgaaccgggcggatgggcaaagacggcatcgccatc
agtttcgtgcggcccgatcaaggcaaacaactcacgagtatcgaagcctcgattaatcgt
ctgattagcgaagatcgaattccagggtatgtcgccttcgatcgtccgccggatgcccca
gctcctgcgtcgccgccgccgccgcccgcgccgcgcttcggtggccgaggccgacggtac
agcaaacgcatctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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