KEGG   Aliivibrio fischeri ES114: VF_0444
Entry
VF_0444           CDS       T00236                                 
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05590  ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
Organism
vfi  Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:vfi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vfi03009]
    VF_0444 (srmB)
Enzymes [BR:vfi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VF_0444 (srmB)
Ribosome biogenesis [BR:vfi03009]
 Prokaryotic type
  rRNA helicases
   VF_0444 (srmB)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_C_2 AAA_19 UTP25 CMS1
Other DBs
NCBI-ProteinID: AAW84939
UniProt: Q5E7Q7
Position
I:complement(473008..474249)
AA seq 413 aa
MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLP
ALQHLDDFPRREPGPARILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHAD
ILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWR
KQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKN
ILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVL
IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMER
VGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKAALAKKKAPKKKKK
NT seq 1242 nt   +upstreamnt  +downstreamnt
gtgctcaaaacgtttgctgacctcgatctatcacctaacctattgcgtgctcttgaggag
atagattatcaacgtccaactcaagttcaggctatgactatccctgaagcattagaaggt
aaagatatccttgcttctgcaccaacagggacaggtaaatctgctgcattcttattacca
gctcttcagcacttagatgacttccctcgtcgcgaaccaggacctgctcgtattcttatc
ctgacgcctacacgtgaattagcaattcaagttgctgatgaagctcgtcaattagcaaaa
tatactcgtcataaagtatttacgattacaggtggtattagctaccaagatcacgctgat
attttagctactactcaagatatcgttgtagcaacccctggtcgtttaatggagtacatc
gaagctgagcgctttgattgtcgagctattgaaacccttattcttgatgaagcagatcgc
atgttagatatgggttttggccctgttgttgaccgtctatctaaagaatgccgttggcgt
aagcaaaccttcttattctcagcgacattagaaggtcgtggcgtagaaggctttactgca
gacctactgaatgaacctgcagagattaatgcagagccatcacgccgtgagcgtaaaaag
atcactcagtggtaccaccgtgctgacaacatggctcataaaattgatctgttaaaaaat
atcttaacagagcaagcagaacgctcaattgtattcgtaaaaacacgtgaacgtttagcg
gaacttcgtggccacttagaaacagcaaaaatcccttgtgcttggattcaaggtgaaatg
gctcaagaaagccgtaataacgcaatttctcgcttccgtgacggaacagtaaacgtgtta
attgcgacagatgttgctgctcgtggtattgatttacctgacgtttcacacgttatcaac
tttgacatgccacgtactgctgatgtgtacttacaccgtattggtcgtaccgctcgtgct
ggtaaaaaaggtaatgcggtatctttaattgaagcgcatgatcaaccaatgatggagcgt
gtaggtcgttacatcaaagaagatgacatcattaaagaacgcttcatcgaagggctaaaa
cctaagcataaaaaacctgttttcaaaaataaacagaagaaaaatgcgaagaagaaagct
gctttagcgaagaaaaaagcaccgaagaaaaagaagaagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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