KEGG   Vibrio atlanticus: VS_II1137
Entry
VS_II1137         CDS       T00812                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
vsp  Vibrio atlanticus
Pathway
vsp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VS_II1137
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vsp03019]
    VS_II1137
   03009 Ribosome biogenesis [BR:vsp03009]
    VS_II1137
Enzymes [BR:vsp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VS_II1137
Messenger RNA biogenesis [BR:vsp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VS_II1137
Ribosome biogenesis [BR:vsp03009]
 Prokaryotic type
  rRNA helicases
   VS_II1137
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII WSD CMS1
Other DBs
NCBI-ProteinID: CAV27059
UniProt: B7VSB7
Position
2:complement(1275408..1277477)
AA seq 689 aa
MESVSDWISIGIDRAPGTFCLLIYSGIPMSESVIQFNELALNENILSALDSMGFVSPTPI
QAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMAPTRELAIQVAA
EIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHT
FVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAG
TNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVRTRQDTERLADWLSARGFKA
AALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHR
IGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQLPQRDEVAAARVAKLGAELE
TEKESKALENFAGLISTLQESLEVDAATLAAMLLKRQQGKSPLFYVGEDPMIAAIERDKN
RRKERREDRDNGRGDRNFNTQDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIK
LDQGSTYVQLPKAMNSETAGKLSKLRIRQKEAGAVVVDFNDFREPRRGGGGRDGNRGGRD
GGRGGRDGGGYRGNREGGNREGGNGGRGGYRGNRDGARDGNSAGGRDGERRFDRNRGGDH
RGNHRGERGHGNAAGNGGNRGRRPERNEG
NT seq 2070 nt   +upstreamnt  +downstreamnt
atggaatcagtatctgattggatcagtattggaattgatagagctcccgggaccttttgt
ttacttatatatagtgggatcccaatgtccgaatctgtaattcaatttaatgaattagcc
ctaaacgaaaacattctttcagctcttgatagcatgggtttcgtttctccgactccaatc
caagcagcagctattcctcttcttcttgaaggccgtgacgcactaggtaaagcacagact
ggtactggtaaaacagcagcattttctctgcctttacttaacaaaatcaacctgaaccaa
cataaaccacaagcaatcatcatggctcctactcgtgagctagcgattcaagttgctgcg
gaaatcaaaaacctaggccgtgatatcaaaggtcttaaagttcttgaaatctacggtggc
gcttcaattgttgaccaaatgcgcgctctaagccgcggtgctcacattgttgttggtact
ccaggtcgtgttaaagacttactaactcgtgaccgtctacacctagatgaagcacacaca
tttgttcttgatgaagcagatgaaatgctaaaaatgggcttcgtagatgacgttacttgg
atcctagagcaagctccagaatctgcacaacgtgtacttttctctgcgactatgcctcca
atggttaagactattgttgaccgttacctacgtaacccggctaaagttgacgttgctggt
actaaccacacagttgacaaagtagcgcagaactactgggttgttaaaggcgtagaaaaa
gacgaagcaatgtctcgtcttcttgaaactgaagaaactgacgcgtcaatcgtattcgta
cgtactcgtcaagacactgagcgtctagctgattggctatctgcacgtggcttcaaagct
gctgcactgcacggtgatattcctcagtctctacgtgagcgcactgttgatcacatcaaa
caaggtgttatcgatatcctagttgcaactgacgttgtagcacgtggtcttgatgttcca
cgtatcactcacgtatttaactacgacatcccattcgatgttgaatcttacatccaccgt
attggccgtactggtcgtgctggacgtaaaggtaaagcgatcctactagttcgcactaac
caaatccgtatgcttcgcacaatcgagcgtgtaactaagtctcaaatggaagaaatccaa
cttccacaacgtgacgaagttgctgctgcacgtgttgctaagcttggtgctgagcttgaa
actgagaaagagagcaaagctctagaaaacttcgcaggtttaatctctacactacaagaa
tctctagaagttgatgctgctactctagctgcaatgcttcttaagcgtcagcaaggtaag
agccctctattctacgttggcgaagacccaatgatcgctgctattgagcgtgataagaac
cgtcgcaaagagcgtcgtgaagaccgtgacaatggtcgtggcgatcgtaacttcaatacg
caagattgggatacgtaccaactacaagttggccgtgagcaaggcgttcaggttaaagac
atcgttggcgcactagcaaacgaacttggcctaactaaaggttctatcggtgctatcaag
ctagaccaaggttctacttacgttcaactgccaaaagcaatgaactctgaaactgctggt
aagctaagcaaacttcgtattcgccaaaaagaagctggcgctgtagttgttgatttcaac
gacttccgtgagcctcgtcgtggcggcggcggtcgtgatggcaaccgtggcggtcgtgat
ggcggtcgtggcggtcgtgatggcggcggctaccgtggtaaccgtgaaggcggtaatcgc
gaaggcggcaatggcggtcgtggtggctaccgtggcaaccgtgacggcgcacgtgatggt
aactcagctggcggccgtgatggcgaacgtcgctttgaccgtaaccgtggtggcgatcac
cgtggtaaccaccgtggcgaacgtggccatggcaacgcagcaggcaatggcggcaaccgc
ggtcgtcgtccagagcgcaacgaaggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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