KEGG   Vitis vinifera (wine grape): 100245866
Entry
100245866         CDS       T01084                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50
  KO
K13179  ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100245866
   03009 Ribosome biogenesis [BR:vvi03009]
    100245866
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100245866
Spliceosome [BR:vvi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    100245866
Ribosome biogenesis [BR:vvi03009]
 Eukaryotic type
  90S particles
   Helicases
    100245866
  Pre-60S particles
    100245866
SSDB
Motif
Pfam: DEAD Helicase_C Helicase_C_2 ResIII SNF2-rel_dom
Other DBs
NCBI-GeneID: 100245866
NCBI-ProteinID: XP_002275635
UniProt: F6HE56
Position
5:join(3092312..3092630,3093585..3094246,3095216..3095410,3103793..3103980,3105684..3105897,3106637..3106768,3106852..3107027,3107161..3107398)
AA seq 707 aa
MLAKGLVSLPSESLRLRWKQSQLQTPFGCRSIPCRSRKSKVMLVTARYSRRQMDTPGAYQ
LIDDETGEKFIVWGGIDDDPPIPSKDVLSWNPVDNNTPTPSKDGHAGIEPAAAVKKDVFP
KAQTKGVTGSFGRLKAQRVKALTTKTSKAKRELNECDDNELEVEGAPSRRSIGSHSELEF
MDEKKKLLIHGGNASRAFRRREIKDVIQTTGEIKDKIHSDKTVKRDIGKFSELQITPEKP
HRSDNKIAGADVLVPRVSTANLQGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGK
SFRDLGCSDYMIESLRGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQ
RLREEELQGLGKSSAGCPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRT
QLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILLNDEDFELALQTLINS
SPVTMQYLFVTATLPVGIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKT
PESAFLNKKSALLQLVEGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLAFHAAL
TQESRLANLKEFLNSHSEGVSLFLVCTDRASRGIDFAKVDHVVLFDFPRDPSEYVRRVGR
TARGAGGKGKAFVYVVGKQVSLARRIIERNKKGHPLHNVPSAYELMS
NT seq 2124 nt   +upstreamnt  +downstreamnt
atgctggcgaaaggactcgtgagccttcccagcgaaagcctcaggttgaggtggaagcag
tcccaactccaaacgcctttcggctgccgctccataccatgccgctcccggaaaagtaag
gtgatgttggttacagctcgttattctcggaggcaaatggatactcccggggcttatcag
ctcattgacgacgagaccggagaaaaattcattgtttggggtggaatcgatgatgacccc
ccaatcccttccaaggatgttctctcttggaatcccgttgacaacaacacacccactcct
agtaaggatggccacgcaggtattgaacctgcagcagcagttaaaaaagatgtttttcca
aaggcacaaaccaagggagtaactggaagtttcggaagattaaaagcccagagagtgaaa
gctcttaccacaaagacatctaaggcaaagcgagagcttaatgaatgtgatgataatgaa
ctagaagtagaaggtgcaccctcccgaagatctattggttcacattctgaacttgaattc
atggatgaaaagaagaaattgctcatacatggaggaaatgcttcaagggctttcagaaga
cgagaaatcaaggatgtgattcaaacaacaggggaaatcaaagataagatccattctgat
aaaactgtgaaacgtgacattgggaagttctcagagcttcaaattacaccagaaaaacct
cacagatctgacaacaaaatagctggagcagatgttctagttccaagagtttctactgct
aatttacaaggatggggttatggggagaccatgcgtaactttgaatttgaaacgactaac
attccaaagcgacggggaaaaggaaactcattggctgacagtgattttttcagcggaaaa
tcctttagagacctagggtgcagtgactatatgattgaatccctaaggggtcagcttttt
gtacgcccttcacatattcaggccatggcgtttgcaactgttatggagggaaaaagctgt
attatagctgatcaaagtggatcaggaaagacattggcatatcttctcccagtaattcag
cgtcttagggaagaggagctccaaggtctgggcaagtcctctgcaggatgccctcaagtc
gttatactggtgccaactgctgagttggcttctcaggtgttaagtaattgccgatcaatc
tcaaaatttggggctccattccgttccatggctgcgacaggtggttttcgacagagaact
caattggaaaatctacaacaggatttggatgttctaattgcaacccctggtcgttttatg
ttcctaattaaagaaggcttcttgcagttaacaaatcttagatgtgccgtgttggatgag
gtagatatactactaaatgatgaagattttgagctagcgctgcagactttaattaattct
tcccctgttaccatgcaatatctctttgtgacagcaactttaccagtaggcatatataac
aaactagttgaagtttttcctgactgtgaagtgatcatgggacctggtatgcaccgaata
agctccagacttgaggaggttcttgttgactgcagtggagatgatgggacagaaaaaact
cctgaatcggcctttctcaataagaaatctgctcttttgcagcttgtggagggaagtcca
gtttccagaacaattgttttctgtaacaagattgagacatgtagaaaggttgaaaatgta
ttaaagcattttgatagaaaaggagttcgtttgcgagttttagcattccacgctgcattg
actcaggagtctaggctagcaaatttgaaggagttcctcaattctcactctgaaggagtc
tctctctttttggtttgcactgatagagcatctcgtgggatcgactttgccaaagtggat
catgttgtactctttgacttcccccgtgatccaagcgaatatgtacgacgagttggaaga
acagccagaggtgctggaggaaaggggaaggcatttgtgtatgtggttggtaagcaggtt
tctcttgcaaggaggatcatagaaagaaacaaaaagggccaccccttgcacaatgttcca
tctgcctatgagctcatgagttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (11)   
   RefSeq(nuc) (1)   
   GenBank (5)   
   EMBL (5)   
Protein domain (5)   
   Pfam (5)   
All databases (41)   

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