KEGG   Vitis vinifera (wine grape): 100250120
Entry
100250120         CDS       T01084                                 
Name
(RefSeq) RNA polymerase sigma factor SigE, chloroplastic/mitochondrial
  KO
K03093  RNA polymerase sigma-I factor
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100250120
Transcription machinery [BR:vvi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     100250120
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r4 Sigma70_r2 GerE Response_reg_2
Other DBs
NCBI-GeneID: 100250120
NCBI-ProteinID: XP_002268709
UniProt: E0CUJ7
Position
16:join(24440878..24441588,24441704..24441850,24442092..24442328,24442628..24442891,24443054..24443251)
AA seq 518 aa
MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE
TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED
LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVAS
IQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLL
EVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYF
QEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVS
FGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHAT
TQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLG
EIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF
NT seq 1557 nt   +upstreamnt  +downstreamnt
atgggagttgtgactgtttctagctcagcttcagcttctcgaaccccatttggattgaac
gcaaaattttcaaatcatcaaacccctttgaggaggcccctagttttggcattcaaagca
gataaagccaagaacatagctctggttactccccatgagccaatccctttacctatagag
acttctaaagatcataagaagagacttcgtagggcttccaagccttcaaagagagtaaaa
gcggtcagtacagatgaagtatcgccatgtagtgtagaattggattacaatgaagctgct
gccaaacttgaaaatatatacaagcttagccctgcaactgatgtttcagaggcagaagat
ttagaacgtgtcgttaggagagggcgacagaggaggaagagagttactttggctgatgac
aaggcagagaaggaggttagtgataatgtagtgaggatccataataagaaaccgaaacga
ttgagtcttgagaagaggattgctttgagtaagatgaagcaagaaaaagcagttgcttca
attcaaaagaaaagggacagtaaaaatgaagatgaaaatattgatgtgcttgttagggag
tactcggcttctactgacttggtcagtttggactggaagaaaatgaagataccacccgtg
cttcctccctcagagcatgcatggctattcaagctaatgcagcccatgaagggactcctt
gaagtgaaagacaacttacaaaaggatttggggagagaaccaaccgatggggaattagca
gaggccatgagtatgagtgcagttcaagtaagaagacacatggaagttggtcaagcagca
agaaacaagctgattaagcacaatcttcgactggttttgtttgtaatcaacaagtacttt
caagagtttgccaatggcccaaagtttcaagacctgtgtcaagcaggagtgaagggcctt
atcacagccatcgatcgctttgaaccaaaaaggagtttccggctctcaacctatggtctg
ttttggattaggcatgccatcatgcgctccatgacactctcaagctttacacgcgtctcc
tttggccttgagtcggttagggtagaaatccaaagagcaaaactagagttgttgttcaag
ctccaaagattaccaacagaggaagagataatagaaaaggttggaatctcccctgagagg
taccatgaagtgatgagggcctcaaaatccgtcctctctctccatgcaaggcatgcaacc
acacaagaagagtacatcaatggaattacagatgttgaaggtgttgggggtgataggggg
cggcaacttgctcttctcagacttgctcttgatgatgtgctcgattctctgaagccaaag
gagagcttggtgatgagacagagatatggtcttgatggtaagggtgatcggacactgggg
gagattgcaggaaacctaagcatctcaagagaaatggttcgaaagcatgaggtgaaggct
ctcatgaagctcaagcatccagcacgagtggattatcttcgccaatacatattctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

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