KEGG T01084: 100258635

Vitis vinifera (wine grape): 100258635

Entry

100258635         CDS       T01084

Name

(RefSeq) DEAD-box ATP-dependent RNA helicase 20

K12823

ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]

Organism

vvi Vitis vinifera (wine grape)

Pathway

vvi03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100258635
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100258635
   03009 Ribosome biogenesis [BR:vvi03009]
    100258635
Enzymes [BR:vvi01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100258635
Spliceosome [BR:vvi03041]
Complex A
  U1 snRNP components
   U1 related factors
    100258635
Complex B
    100258635
Ribosome biogenesis [BR:vvi03009]
Eukaryotic type
  Pre-60S particles
   Helicases
    100258635

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII MAGI_u5 ERCC3_RAD25_C

Other DBs

NCBI-GeneID:

100258635

NCBI-ProteinID:

XP_002266157

UniProt:

D7SJI2

Position

6:join(8907521..8907811,8908625..8908717,8908821..8908985,8909137..8909232,8910163..8910237,8910483..8910644,8910972..8911052,8911757..8911855,8920812..8920907,8921826..8921957,8927527..8927601,8927920..8928009,8928111..8928185,8928425..8928601)

AA seq 568 aa
MSYVPPHLRNPSSSISRTSKPTETSAVTLDDTHRTTNNLSYSSTNSHLSHSNASSSPSLS
RWASSNAAAVPRTPSVPEPVFPQWKPSDRVFLMKPEQIEEVRLRLNVDVTVAPDLPPAPA
PIESFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIP
MIQHCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQ
RSELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLP
QKHQTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLA
LLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALR
DFRNGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFY
TDRDVFLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEARIALSNLSLMGPTS
LNIEEKYRFMMSPSSIKTEGAADDAWDD

NT seq 1707 nt +upstreamnt +downstreamnt
atgtcttatgtgccaccgcacctgaggaacccttcttcttctatctctcgaacctccaaa
cctaccgaaacctccgcggtaaccctagacgacactcatcgcaccaccaacaacctttcc
tattcctccacaaactctcatctctctcattccaacgcctcttcctctccttctctctct
cgttgggcctcctccaatgccgccgccgtgcctcggactccctccgttccggagcccgtt
ttccctcagtggaagccttccgaccgtgttttccttatgaaacctgaacagattgaagag
gtccgattgcggcttaatgttgatgttactgttgctccagacttgcctcctgcacctgca
ccaattgaatcattcacagacatgggtctgcaccaaagcatcatgaaggatattaccttt
catgaatatactaggcccacctttattcaagctcaggccatgccagttgctctcagcgga
agggatctcctgggatgtgctgaaactggtagtggaaagactgctgcttttgctattcct
atgattcagcattgcttggctcaacctcctgttcggcgaggtgatggaccattggcattg
gtcttggctcccacaagagagcttgcccaacaaatagaaaaggaggttaaggcttttagt
agatcacttgattcctttagaactgcgatagttgtgggtggaacaaacatttccgagcag
aggtctgaacttagagcaggagtaaatatagtggttgccactcctggaagattcattcat
catttacaagaaggaaacacgtctctttccagaatttcatttgttgttttggatgaagct
gacagaatgcttgacatgggatttgaaccacaaataagagaggtgatgcaaaatctgcca
caaaagcatcaaacactgctgttcagtgcaaccatgccaatggagattgaaacattagca
caggagtatctaaataatcctgtgcaagtaaaggtgggaaaagtgagttgcccaacagca
aatgtttctcagattttggagaaggtttctgaaagtgagaagattgatggacttctagct
ttacttgtggaggaggcatcccaggctgaaagatgtggtcgtccctttcctttaaccatc
gtttttgttgagaggaagacaaggtgcgatgaagtcgcggaagctttggtagctcaaggt
ctgcgtgcagttgctcttcatggtggccgcagtcaagctgaaagagaggctgcccttcgt
gattttaggaatggtgctactaatatcttggttgccactgatgttgcgtcccgtggtctg
gatgttacaggagtcgcccatgttattaatctcgatcttccaaaggcaatggaaaattat
gtacaccggattggaaggacggggcgtgcaggatcaacaggccaagctacttctttttat
actgatcgtgatgtgttccttgtggctcatataaggaaagcaattgctgatgttggatct
gggaatactgtggcatttgcaactgggaaagttgcaagaaagaaggagagagaagcagca
gctgcacagaaagaagctaggattgcattgtccaatctctcattgatggggccgacatca
ttaaatatagaggaaaagtataggttcatgatgagcccctcgagcatcaagacagaaggt
gcagcagatgatgcttgggatgactga

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