KEGG   Xanthomonas axonopodis pv. citrumelo F1: XACM_4218
Entry
XACM_4218         CDS       T01616                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
xax  Xanthomonas axonopodis pv. citrumelo F1
Pathway
xax03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xax00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    XACM_4218 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xax03400]
    XACM_4218 (recD)
Enzymes [BR:xax01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     XACM_4218 (recD)
DNA repair and recombination proteins [BR:xax03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     XACM_4218 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 AAA_11 UvrD-helicase SH3_13 AAA_22 Helicase_RecD UvrD_C DEAD AAA_16 RecD_N T2SSE nSTAND3 SLFN-g3_helicase Phageshock_PspD AAA_28 Rad17
Other DBs
NCBI-ProteinID: AEO44449
Position
complement(4904785..4907160)
AA seq 791 aa
MTHPNLLAALNQSGALRTLDLAFAQSLQRLEPDTDPRVLAGAALASLAVTSGHAGLDPAR
AAMLLDARDGPAPTFPDPADWQRSLAASRWVDQPQPDAPAAADCPLVLERGLLYLRRYRE
YERRLALGLQRIAAQPLPPVDAATLAPLFAQLFPNAIPTPRTAEPTPLPPGEGARRAGEG
TGLPAPIHYQEGTNPPTPSHPPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
AQARASSTPAPRIALAAPTGRAAERMAESLRAAIARAIADGIQLPAAGSLPAPSASAGLI
TSTHPTNAAAPASTGAGLELQTHAASERGGPPSWEALLPSGASTLHRLLGVIPDSPHFHH
NADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQLILLGDADQLPSVEAGDVLAAILQ
AAGPGDALQPEDAQALQSLLGSAAVERLPAVTSATRSGGLDGHRVHLLRGYRQAQDFALA
PLADAIRAGDADTALALLRSGELPGVHFHEDGEDPLVLGRDALLAHWRALANAQDPAAAL
RDAGRLRLLTAVRAGPQGVRGLNARIEQLLADTGSGARRLGGASPWFQGRLLLITENSYR
HGLFNGDVGICLRSDAGPSPGQGDASAVTARGHAAPSSRPGHAGDSARHDAPATDRPAQG
PLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSREL
LYTGITRARRALHLAGSEAVMRAALARHAARISGLAWRLGAKDDKPPPVPAPTPASLPQP
PPSAPVQGALF
NT seq 2376 nt   +upstreamnt  +downstreamnt
atgacccatccaaacctgctcgccgccctcaaccagagcggcgccctgcgcaccctggat
ctggccttcgcgcaaagcctgcaacgcctggagcctgacaccgacccacgggtgctggcc
ggcgccgcgctcgcctcgctggcggtcaccagcggccacgccggcctggaccccgcccgc
gccgccatgttgctggacgcgcgcgacggcccggcgcccaccttcccggaccccgccgac
tggcaacgcagcctggccgcctcgcgctgggtcgaccaaccgcagcccgacgccccggcc
gccgccgattgcccgctcgtcctcgaacgcggcctgctctacctgcgccgctaccgcgag
tacgaacgccgcctggccttgggcctgcaacgcatcgccgcgcaaccgctgccgccggtc
gacgccgccacgctggcgccgctgttcgcgcagttgttcccgaacgcgatcccaacccct
cgcaccgcggagccaaccccgctccccccgggagagggtgcccgacgggcgggtgagggt
acgggcctgcccgcgccaatccactaccaagagggaacaaacccccccacgccatcccac
cccccggaccgccaggcccaggccgccgcactcgcgctacgccgcgcgttactgctggtc
accggcggcccgggcaccggcaagaccaccaccatcgcccgcctgctgttgctgcgcatc
gcccaggcacgggcatccagcacgccggccccacgcatcgccctggccgcgcccaccggc
cgcgccgccgagcgcatggccgaaagcctgcgcgccgccatcgcgcgtgccatcgccgac
ggcatccagctcccggccgccggctcgctccccgcaccatcggcaagcgccggcctcatc
acgtccacgcatccgaccaacgccgccgcgcccgcgtccaccggcgccggattggaactg
cagacgcatgccgcctcagagcggggcgggccgcccagctgggaagcgctgctgcccagc
ggtgccagcactctgcatcgtctgctcggcgtcatcccagattccccgcacttccaccac
aacgccgacaacccgctgccgttcgacctgatcgtcgtcgacgaagcctccatggtcgac
ctgccgctgatgtgcaaactggtcgacgccgtcgccgatggcacccagctgatcctgctt
ggcgatgccgaccagctgccttcggtggaagccggcgacgtgctggccgccatcctgcag
gccgccggcccgggcgatgccctgcagcccgaagacgcccaggcactgcaatcgctgctc
ggtagcgcggccgtcgagcgtctgcctgcggtcacctccgccacccgcagcggcggcctg
gacggccaccgcgtgcacctgctgcgcggctatcgccaggcgcaggatttcgcactggcg
ccactggccgacgccatccgcgccggcgatgccgacaccgccctggccctgctgcgcagc
ggcgaactgcccggcgtgcacttccacgaagacggcgaagatccgttggtactcggccgc
gacgcgctgctcgcgcactggcgcgcgctggccaacgcccaggaccccgccgccgccctg
cgcgatgccggccgtctgcgcctgctcaccgcggtgcgtgccggcccgcaaggcgtacgc
ggcctcaacgcccgcatcgaacaactgctcgccgacaccggctccggcgcccgccgtctg
ggcggcgcctcgccctggttccagggccgcctgctgctgatcaccgaaaacagctatcgc
cacggtctgttcaatggcgatgtcggtatctgcctgcgcagcgacgcgggcccttccccc
gggcagggcgacgcgagtgccgtgaccgcgcgcggccacgcggcaccgtcgtcaaggccg
ggccacgctggcgacagcgcacgccatgacgcccccgccaccgaccgccctgcccaaggc
cccttggtcgcctggttcgaaggcgacggcgacggccaggtgcgcggcttccatcccgcc
gcactgcccgcgcacgaaagcgccttcgctatgaccgtgcacaaggcccagggcagcgaa
ttcgacgaggtctggctgcaactgcctacccgcgacgcccgcgtactcagccgcgaactg
ctctacaccggcatcacccgcgcccgccgcgccctgcacctggccggcagcgaagcggtc
atgcgcgccgcactggcacgccacgccgcgcggatctcgggcttggcgtggcggttgggt
gcaaaagacgacaagccaccgccggttccagcacccacgccagcgtcgcttccacaaccg
ccgcctagtgcacctgtgcaaggtgcgctgttctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (28)   

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