KEGG   Xenopus tropicalis (tropical clawed frog): 100493221
Entry
100493221         CDS       T01011                                 
Symbol
nid1
Name
(RefSeq) nidogen-1 isoform X1
  KO
K06826  nidogen (entactin)
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100493221 (nid1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:xtr04990]
    100493221 (nid1)
Domain-containing proteins not elsewhere classified [BR:xtr04990]
 EGF-like domain-containing proteins
  cEGF domain-containing proteins
   100493221 (nid1)
SSDB
Motif
Pfam: G2F NIDO EGF_3 Ldl_recept_b cEGF Thyroglobulin_1 EGF_CA FXa_inhibition EGF SGL Plasmod_Pvs28 EGF_MSP1_1
Other DBs
NCBI-GeneID: 100493221
NCBI-ProteinID: XP_002935874
Xenbase: XB-GENE-1003556
UniProt: F6VE55
Position
5:56743639..56792967
AA seq 1230 aa
MLYFKPRSLFFGGLLHVLFCLLPNPGNFIKVSQFFPYGPDVGDLLLTPGDDSQSEPLRPN
PALHFYDETISTLFVTTNGMIAASNPPPESDYLEQFPPDFGLIAPFLSDIDTTQGGNVFY
REDTSQDVLHLASKHIIRGFPGSSFKPTTALVVTWEDVLPYYSQRGDTIPKNKGNTFQAV
LASDESKSYAIFLYPEDGLNFYETQSKNDRNEENSARVGFSKGSERGFFWTTTQGPHNEF
ASDYDSLEILCWKTNSGMQGVWIYEIGAPNLRSVVAADVQLSATLDEKEQEENHFEETED
FTDHYVTEPDYENNSLKPSIPGPTSISVDPYQGQKDVILGNVNFQVPSFPQNNPQVVIVD
DELEDTGVVFQYNTGSQQTCANNRHQCSSQAFCKDFSTGFCCSCIPGYYGNGRQCVAEGS
PQRVNGKVKGKIYVGSNPVPVVFEGIDLHSYVVVNDGRAYTAISTIADSLGYSLLPLASI
GGIIGWMFSVQQPGYKNGFSITGGEFTRRAEVTFLQSNKKLVILQKFSGIDEHGHLTIST
ELEGSVPEIPYGSTVHIEPYTELYQTSSSVITSTSTREYTVEFPQDGSETFTYQWKQTIT
FKECVHDTTAPTVPAIQQLSVDRVFVLYNRDEKILRYASSNSIGPITDSPVDTNRNPCYV
GTHVCDTNAVCRPAQGNQYTCECTSGFRGDGRTCYDIDECQEQQDICGDNAICNNQPGTF
RCECNDGYQFLEDGRTCAAVDRPTNHCLTGTHNCDIADRARCIYTGGSSYICACLSGYSG
DGRACEDVDECETSQCHPDAVCYNTPGSFSCHCNPGYRGNGFQCFPGEPEKTACQLHLDS
ILGSPSVRGARPVGQYIPQCDESGNYIPRQCHSGSGYCWCVDRFGNELPGTRTGPGLSPP
CLGIVTHPPPTVGPPVRPDVVPLPPGTHLLFAQSGKIEHIPLEGNNMKKTDAKTLLHIPD
KVIIGVAFDCVDKTVYWTDITGPSISRASINGGEPTAIIKTELGSPEGIAVDHLGRNIFW
TDSLLNTIEVAKMDGSNRRVLFDTDLENPRGIVADAPKGNLYWTDWNRAAPKIETSYMDG
TNRRILVKDDLGLPNGLTIDPYSSMLCWIDAGTKRMECMNPSQPARRKIVEGIQYPFGIT
SYGKNLFYTDWKRDAIVAIDRTISKESDSYQPPKRSRLYGITTAYSQCPQGQNYCAVNNG
GCTHLCLATPGGRSCLCPENSIGVDCLDRN
NT seq 3693 nt   +upstreamnt  +downstreamnt
atgttatattttaagcccagaagcctgttttttggagggctgttacatgttttgttctgc
ttgttgcctaacccagggaacttcataaaagtcagtcagttcttcccttacggacctgat
gttggtgaccttcttttaactcctggagatgattctcaatcggaacctttacgacccaat
ccagcgcttcatttctatgacgaaacaatctctaccctattcgtaacaactaatgggatg
attgcagcaagcaatccgccaccagaaagcgattatcttgagcagttccctccagatttt
ggtctgattgccccttttctgtcagacattgataccacacaaggtggaaatgtgttttac
agagaagacacgtcacaagacgtcttacatttggcatctaaacacattattagagggttt
ccaggaagttcctttaagccaactactgctcttgttgtcacttgggaagatgtgttaccc
tactactctcagcgaggggatactattccaaaaaacaagggaaacacttttcaggctgtt
ttagcatcagatgagtcaaaatcctatgctattttcctctacccagaggatggcttaaac
ttttatgagacacaatcaaagaatgatcgcaatgaggaaaactcagccagagttggattt
agtaaagggtcagaaagagggtttttctggacgacgactcaaggaccgcataatgagttt
gccagtgattatgattccctggaaatattatgctggaaaaccaattcaggtatgcaggga
gtctggatttatgaaattggagctccaaatctcagatctgttgtggctgctgatgtacag
ctctctgctactcttgatgaaaaagaacaagaggaaaaccattttgaagagacagaagat
tttactgaccattatgtaactgaaccagattatgaaaataattcactaaaacctagcatt
ccgggtcctacttcaatttctgttgacccctatcaaggccagaaggacgttattttggga
aatgtgaattttcaagttccatcttttccacaaaataacccacaagttgtgattgttgat
gatgaactagaggacactggagtagtgttccagtataatacaggaagtcagcagacctgt
gctaacaatcgccatcagtgctccagtcaggcattttgcaaagatttttcaactggattt
tgttgtagttgcattcctggctattatggtaatggaaggcagtgtgtggcagaaggatcg
cctcaaagagtgaatggcaaagtcaaaggaaagatttacgtgggaagtaatcctgttcca
gtggtgtttgagggcattgaccttcactcatatgttgtggttaatgatggacgagcttat
acagctattagcacaattgctgattctttggggtactctttgcttccattagcatcgatt
ggtggaattattggatggatgttttctgtgcagcaaccaggatataagaatggtttcagc
attacaggtggagaattcacacgaagagcagaggttactttcttgcagagcaataagaag
ctagtaatcctgcagaagttcagtggcattgatgaacatggtcatctcaccatcagtact
gagcttgaaggcagtgtaccggagataccatatggatccacagtccacattgagccttac
acagaattatatcagacatctagttctgttattacatcaacatctaccagagagtacact
gtagagttcccacaagatggctcggagacatttacttatcaatggaaacagaccatcaca
tttaaggaatgtgttcatgacaccactgctccaacagtccctgcaatacagcagctttca
gttgatagagtttttgtactgtacaacagagatgagaaaattctccgatatgcttccagt
aactctattgggccaataactgacagccctgtagatacaaatcggaacccatgctatgta
ggtacacatgtctgtgacacaaacgctgtttgccgcccagcacaaggaaaccaatacaca
tgtgaatgtacttcaggtttccgtggagatgggaggacatgttatgacatcgatgaatgt
caggagcaacaagacatatgtggggataatgccatatgtaacaaccagcccggaacattt
agatgtgaatgtaatgacggatatcaatttttggaagatggaaggacatgtgcagctgtg
gatcgccctacaaaccactgcttaactggaacacacaactgtgatattgcagaccgtgct
cgttgtatatacactggaggctcttcatacatatgtgcttgtttatccggatattctgga
gatggacgtgcatgtgaagatgttgatgaatgtgaaaccagtcaatgccatccagatgct
gtgtgctataacactccagggtcattttcatgtcattgtaatcctggataccgtggaaat
ggtttccagtgcttcccaggagaaccagaaaagacagcatgccagctccatctagatagt
attcttggctcaccctctgtcagaggtgcaaggccagttggtcagtatattccacagtgt
gatgaaagtggtaactacattccaaggcaatgccattctggcagtggatattgctggtgt
gtggacagatttggtaatgaactacctggtacaagaacaggtcctggacttagtccacca
tgtcttggtatagttactcatcctcctcctactgttgggccccctgtgagaccagatgtt
gttcctctgccaccgggaacacatttgctgtttgcacagagtgggaagattgagcatatc
ccgctagagggaaacaacatgaagaaaactgatgccaaaaccttacttcatatcccagat
aaagttataattggtgtagcctttgactgtgtggacaagactgtatactggacggatatc
actggaccttctattagtagagccagcataaatggcggggaaccaactgcaattattaaa
acagagttaggaagccctgaaggaatagcagttgaccatctgggtcgtaacattttttgg
actgattctctattgaatacaattgaagtagccaagatggatggaagtaatcgtcgagta
ttatttgatactgatctagagaaccccagaggaatagtagctgatgcaccaaaaggaaat
ctctactggactgactggaacagagctgccccaaagattgagacatcttatatggatgga
accaacagaagaattcttgttaaagatgatcttggtcttccaaatggacttaccattgac
ccatattcatcaatgctttgttggattgacgcaggaactaaaagaatggaatgcatgaat
cccagtcagcctgcacgccgaaaaattgtggaaggcattcagtatccgtttggtataaca
agttatggaaagaacttattctatacagactggaagagagatgccattgtagcgatcgat
cgcaccatttccaaggagagtgacagctaccagcctcccaaacgatcccgtctgtatgga
attactactgcttattcccagtgtcctcaaggtcagaattactgtgcggtaaacaatgga
ggctgcacacacctttgcttggcaactcctggaggtcgatcctgcctctgccctgaaaac
agcatcggagtggattgcttagatagaaattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (12)   
   Pfam (12)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system