KEGG   Xenopus tropicalis (tropical clawed frog): 100494897
Entry
100494897         CDS       T01011                                 
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
  KO
K13131  ATP-dependent RNA helicase DDX20 [EC:5.6.2.7]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    100494897 (ddx20)
Enzymes [BR:xtr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100494897 (ddx20)
Spliceosome [BR:xtr03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    100494897 (ddx20)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 AAA_19 CMS1 HERV-K_env_2
Other DBs
NCBI-GeneID: 100494897
NCBI-ProteinID: XP_002932842
Xenbase: XB-GENE-976478
UniProt: A0A8J0QLB2
Position
2:59575002..59589325
AA seq 773 aa
MAAHMLGSRPRTEDVSQGTGDTTDFKSLLLSRPVLDGLEAAGFNKPSPIQSKAIPLGRCG
LDLIVQAKSGTGKTCVFSTVALDSLILENTATQVLVLAPTREIAVQIHSVMLSIGCRMEG
LESHVFIGGTPLPQDKIRLKKCHIAVGSPGRIKQLIEIGYLNTSSVRLFILDEADKLLEE
GSFQEQINWIYSSLPANKQMLAVSATYPESLAKALTRYMREPTFVRLNVTDPSLLGLKQF
YKVVKSHPLPHKVFDEKVMHLQELFNRISFNQALVFSNLHSRAQHLANILTAKGFPAVCI
SGSMNQNQRLDAVAKLKQFHCRVLISTDLTSRGIDAERVNLVINLDVPEDWETYMHRIGR
AGRFGTHGLSVTFCCHGEEENMMMGIAMKCNLKLLPLPDPIPDGLMEETCNWDIEVTTVK
TIPSSSENQGVCTTEVLSSNPLPETYQNKKATKTHSKTKKTSMKLYPEKESKKGETTVNC
DGILKPPKDVAKPKKPVDNTVNNSANMAELQNSLPKIPSLASFKRSVACTSSFAELVEDY
EQFIKEGLEKHVEIVRVYTGPGDKNELKSENLEQERTDDGGTSEAMSTPEKCGFAESSVS
ESDRSASCSSSVSEESNEDSDIPEPKSSFDHLNSYSEVIKERTIEPTVCELNTDNISDLT
KEGNVMKAHKYKGEMPFVSNTKSRRRSKYTTPVSRRELCSERQDDLYQLEYRNPSRFPYG
TTSYADYWRSYYQAWQTYHSTVSNSYYRNLYKRSSWMSAYHMQSVYLHEMLKP
NT seq 2322 nt   +upstreamnt  +downstreamnt
atggcggcgcacatgctgggatctcggccgcgcactgaggatgtttcgcagggtaccggg
gatactacagattttaaatcgctgcttctatcccgtcctgtgctggatggactggaagca
gctggcttcaacaagccgtccccgattcagagcaaagccattccgttaggcaggtgtggc
ctggatcttatagtgcaagccaagtcgggaacaggaaaaacatgtgttttctctacagtt
gcactggattccttgatcttggaaaatactgcaactcaggtgttggtattggcccccacc
agagaaattgcagttcagatccattcagtcatgttatccataggctgtcgcatggaaggg
ctggaaagtcatgttttcataggagggacaccactgccacaggacaaaattcggctcaag
aagtgccacatagctgttggctctcctggtcgaataaagcagttgatagaaattggttac
cttaacacgtccagtgttcgtctttttatcctcgatgaagctgataaacttttggaagaa
ggaagtttccaggagcaaataaactggatatattcctctcttcctgctaacaaacaaatg
ctagctgtttcagccacttacccggaatctttagcaaaagcactgacaagatacatgaga
gagcctacatttgtaaggttgaatgtaaccgaccccagcctccttggtttgaagcagttt
tataaagttgtgaaatcgcacccactgccacacaaggtttttgacgaaaaggtgatgcat
ttgcaagagctgttcaacagaatttctttcaatcaagctttggtgttctcaaatctccat
agcagggctcagcacttggctaatattcttacagctaaaggcttcccagcagtgtgcata
tctggtagcatgaatcaaaaccaaaggctggatgctgtggccaaactcaagcagttccat
tgccgggtcttaatttctactgatttaacttcgcgggggattgatgcagagagggtgaat
ctggttattaatcttgatgttccagaggactgggaaacctatatgcatcgaattggaaga
gctggacggtttggtactcatggcctctctgtaactttctgttgccatggggaagaggag
aatatgatgatgggaattgcaatgaaatgcaatcttaagcttttgcctttaccagatcca
ataccagatggtttaatggaagagacctgtaactgggatattgaagttactacggtgaag
accataccttcctcttctgagaatcaaggggtttgtacaacagaagtacttagcagcaac
ccactgccagaaacttaccaaaataaaaaggccaccaaaacacattctaagacaaaaaag
acctcaatgaaactttatcctgagaaggaaagtaagaagggggagaccactgtaaattgt
gatggaatccttaaaccacctaaagatgtggccaagccaaagaagccagtggataacacc
gtaaacaacagtgcaaatatggcagagttgcaaaactcgctacctaaaataccaagcttg
gcatccttcaagcgctcagttgcttgtacatcatcatttgcagagctagttgaagactat
gaacaatttatcaaagaaggtttggaaaaacatgtggaaatagtgcgtgtgtatactggc
cctggtgacaaaaatgagctgaaatctgaaaatctagaacaggaaagaactgatgatggg
ggcacttcagaagcaatgagtactcctgaaaagtgtggatttgctgagagttctgttagt
gaaagtgatagaagtgcatcctgctcttcttcagtcagtgaagaaagcaatgaagactct
gatattccagagccaaagagttcctttgatcatcttaactcatactcagaagttataaag
gaaaggacaattgaacctactgtttgtgaactcaacacagataatatttctgacttgaca
aaagaaggaaatgtgatgaaagctcataaatataaaggtgaaatgccatttgtgagcaat
accaaatctagaagacggagtaagtacacaacacctgtgtctagacgtgaactctgttcg
gaaagacaagatgatttgtaccagttggaatatagaaaccctagtagatttccatatggc
accacgagctatgctgactactggaggtcctattatcaagcatggcaaacataccattct
actgtatcaaattcttactaccgtaatctgtacaagcgttcaagctggatgtctgcatat
cacatgcaatctgtgtacctccatgaaatgctaaagccatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system