KEGG   Xenopus tropicalis (tropical clawed frog): 100496866
Entry
100496866         CDS       T01011                                 
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100496866 (mtrex)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    100496866 (mtrex)
   03041 Spliceosome [BR:xtr03041]
    100496866 (mtrex)
   03009 Ribosome biogenesis [BR:xtr03009]
    100496866 (mtrex)
   03016 Transfer RNA biogenesis [BR:xtr03016]
    100496866 (mtrex)
Enzymes [BR:xtr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100496866 (mtrex)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     100496866 (mtrex)
Spliceosome [BR:xtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    100496866 (mtrex)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    100496866 (mtrex)
Ribosome biogenesis [BR:xtr03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    100496866 (mtrex)
Transfer RNA biogenesis [BR:xtr03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    100496866 (mtrex)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 Helicase_dom4_arc AAA_22 Mt_ATP-synt_D
Other DBs
NCBI-GeneID: 100496866
NCBI-ProteinID: XP_002941157
Xenbase: XB-GENE-1013876
UniProt: A0A6I8Q447
Position
1:complement(191550190..191613519)
AA seq 1031 aa
MADAFGDELFSVFEEETPATSKSALPAAAGKTGKRNAKSKGAGAGPAPKAKREADCIDGP
DEVVFGKKPKLEISSADDINLADLMPRIKVQEVETVEGCTHEVALPADEEYVPLKPRVGK
AAKEYPFVLDAFQREAILCIDNNQSVLVSAHTSAGKTVCAEYSIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDY
RPTPLQHYIFPSGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGP
SNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMSKLDFNTDEEKKMVEEVFNNAIDCL
SDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINM
PARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVAEKVKKLEEQ
YNSIQIPNEENVVTYYKIRQQLAKLGKEIEDYIHKPKYCLPFMQPGRLVKVKSEDDDFGW
GAVVNFSKKSNVKPNSGELDPLYVVEVLINCSKESVKNAATEAAKPARPDERGEMQVVPV
MLHTLCAISSVRLYIPKDLRTTDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDPGLK
KVVQKTEAFEHRMYSHPLNNDPNLESLYKLCEKKAQIAVDIRAAKRELKKARTVLQMDEL
KCRKRVLRRLGFATASDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATALLSC
FVFQENSSEMPKLTEQLAGPLRQMQETARRIAKVSAEAKLEVDEETYLGSFRSNLMDVLY
TWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIK
RDIVFAASLYL
NT seq 3096 nt   +upstreamnt  +downstreamnt
atggctgacgcgtttggagacgagttgttcagtgtgttcgaagaagagactcccgcaacc
agcaaaagcgcccttcctgcggcagccggcaagactggcaaacgcaatgccaaatctaaa
ggtgccggggcaggtcctgctccaaaggctaagcgggaggccgactgcattgatggaccc
gacgaggttgtttttgggaagaagccaaaactggagatatcatctgctgatgacataaac
cttgcagacctaatgccccgtattaaagttcaagaagtagaaacagtggaaggctgtacc
catgaggttgcacttcctgcagatgaagaatacgtgcccttaaaaccacgagttggaaaa
gcagcaaaggaatatccatttgttctggatgccttccaaagagaagcaattctgtgtatc
gataacaaccagtctgttctagtgtccgctcacacgtctgctgggaaaactgtttgtgct
gaatattctattgcattggctctgcgtgaaaaacaacgtgtcattttcactagtcctatc
aaagctctcagcaaccagaaatacagagagatgtacgaggaattccaagatgtggggtta
atgacaggagatgtcaccatcaaccctacggcctcctgcctggttatgacaactgagatt
ttgcgcagcatgttatacaggggatctgaagtcatgcgtgaagtggcctgggttattttt
gatgagattcattatatgagagatgcagaaagaggagtagtctgggaggagacaattata
cttctgccagataatgtgcactatgtgttcctgtcagcaaccatcccaaatgcacggcag
tttgctgaatggatctgtcaccttcataaacagccttgtcacgtcatttacacagactat
cgacccactcctctacaacattacatctttccatcagggggagatggactccatctggtt
gtggatgaaaatggagacttcagggaagataactttaatacagcaatgcaggttctcaga
gatgcgggggacttggctaaaggagaccagaaaggacgcaaaggaggaacaaaaggccct
tctaatgtgttcaagattgtaaagatgatcatggagagaaacttccaacctgttatcatc
tttagcttcagtaagaaggactgtgaggcctatgcactacaaatgtccaaactggatttt
aatacagatgaagagaaaaaaatggttgaagaagtatttaataatgcaatagactgtctc
tctgatgaagataagaagctcccacaggttgaacatgtactgcctcttcttaagcggggc
attgggattcatcatggtgggctacttcctatactgaaggagaccattgagatccttttc
tcagaaggcttactgaaggctttgtttgccacagagacatttgccatgggtataaatatg
ccagccaggactgttctatttaccagtgcacggaaatttgacggaaaagatttccgttgg
atctcatcaggtgaatacattcagatgtctggccgtgctgggagacgtggtatggatgaa
aggggaatagtcattctcatggttgatgagaaaatgagcccaacagtcggaaaacagctg
ctaaagggctcagctgatccgctgaacagtgcttttcatctgacatacaacatggtgtta
aatttgttgcgtgtagaggaaattaaccctgagtacatgttggagaagtccttctaccag
ttccaacattacagagccatccctggagttgctgaaaaggttaaaaaactagaggaacag
tataacagtatacagattcccaatgaagaaaatgttgttacatactacaaaatccgtcag
cagcttgccaaacttgggaaagagattgaagattacatccataaacccaagtactgcctg
ccctttatgcagcctggtaggctggttaaggtaaaaagcgaggatgatgattttggatgg
ggtgcagtagtcaacttctccaagaaatcaaacgtaaagcccaattctggtgaactggac
ccactctatgtggtagaagtacttatcaactgctcaaaagagagtgtaaaaaatgctgct
acggaagctgccaaaccagcgaggccagatgagagaggcgagatgcaggttgtcccagta
atgctccacacgctctgtgccataagtagcgtgcgtctgtacattcctaaggatctccgg
accactgacaacagacagagtgtgcttaaatctatccaggaggtacagaagcgctttcct
gatggggtgccgttgttagatcccatcgatgacatgggaatcaaagatcccgggttgaaa
aaagttgtccagaagacagaagcttttgaacatagaatgtattcccatccactcaataat
gacccaaacctggagtctctgtacaagctatgtgagaagaaagcacagattgccgtagat
attcgagcagcaaagcgggagctaaagaaagcacgaacagtgttacagatggatgagttg
aagtgtcggaaacgagtgctgagacgactgggctttgccactgcttctgatgttattgaa
atgaaaggccgagtggcctgtgaaataagcagtgctgatgaactcctccttactgagatg
atgtttaatgggctctttaacgatctgacagcagaacaagcaaccgctctcctcagctgc
tttgtgtttcaagaaaattccagtgaaatgccgaaactgacagagcaattggcaggacca
ctgcgtcagatgcaggaaactgctaggagaattgctaaagtttcggcagaagctaaatta
gaggtggatgaagagacgtacctgggttctttccgttccaacctcatggatgtgttgtac
acttgggcgaacggggcaacatttgcacagatttgcaagatgactgatgtgtttgaaggt
agtataatccgttgcatgaggcgacttgaggaattgctgaggcaaatgtgtcaagcagct
aaagccattgggaacacagaactagagaacaaatttgcagaaggaattacaaaaatcaaa
agggatattgtgtttgctgcaagtctttatctatag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (26)   

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