KEGG   Zymobacter palmae: ZBT109_0872
Entry
ZBT109_0872       CDS       T05646                                 
Name
(GenBank) superfamily II DNA and RNA helicases
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
zpl  Zymobacter palmae
Pathway
zpl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zpl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ZBT109_0872
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zpl03019]
    ZBT109_0872
   03009 Ribosome biogenesis [BR:zpl03009]
    ZBT109_0872
Enzymes [BR:zpl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ZBT109_0872
Messenger RNA biogenesis [BR:zpl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ZBT109_0872
Ribosome biogenesis [BR:zpl03009]
 Prokaryotic type
  rRNA helicases
   ZBT109_0872
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 Metal_resist
Other DBs
NCBI-ProteinID: BBG29645
UniProt: A0A348HDE3
Position
948456..950159
AA seq 567 aa
MTSMSDVSSDFQTLGLLPAVLRSLDILGYTTPSPIQLQTIPSLLEGRDLLGQAQTGTGKT
AAFALPMLSRLDVSRREAQVLVLAPTRELAQQVAVNFGRYGQFIEGLEVVTLCGGQDYRD
QLRSLRAGAQVVVGTPGRVIDHLDRGSLNLSGLSALVLDEADEMLRMGFIDDVERVLRDT
PKTAQRVFFSATLPHEIEKIVNRYLVDPVKVQIEAKAVTTTITQRMCRVEGSAKLEALSR
LIEVENMDAAIVFVRTRAACTTVVEHLSARGVAAAALSGDLDQSLRERTVARLKRGKIDV
LVATDVAARGLDVPRITHVINYDLPHDTEAYVHRIGRTGRAGREGTAITFVGGREMRRIQ
WLERATGQRIESIALPDEKALRAHRDERFKARAVEALSGESSMAQRALVEELVAQGYDPL
DLATVFAQLARADEAPIRPLPRQDSRNDRNDRNDRGGRGERSPRGERGPRRERGPREGMT
RYRVAVGHREGIKPGQLVGALANEGGIEGARIGRIDIRQSFSTVELPNNLPAATLAKMGR
ARVAGRTLDISEDTGRPERRREEHRPA
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgacttcgatgtccgatgtctcgtctgatttccagacgcttgggctgctgcccgctgtt
ctccggtctcttgatatcctcggatacacgaccccttctcccattcagcttcagactatc
ccttccttgctggaaggtcgtgatctgttgggtcaggcccagacgggtactggcaagacg
gcggcctttgcgctgccgatgctgtcacgtctcgatgtttcgcgtcgtgaagctcaagtt
ctggtgctggcgccgacgcgcgagctggctcagcaggtagccgtcaactttggccgttat
ggtcagttcattgaaggcctggaagttgtgacgctgtgtggtggtcaggactaccgtgac
cagctgcgcagtctgcgtgctggtgctcaggtcgtcgtgggtacgccggggcgcgtcatt
gaccacctggaccgcggttccctgaacctgtccgggctgtccgctctcgtgctggacgaa
gctgatgaaatgctgcgtatgggcttcatcgacgatgtcgaacgcgttctgcgtgacacg
ccgaagacggctcagcgcgtcttcttctctgcgacactgccgcacgagatcgaaaagatc
gtcaaccgttacttggttgatccggtcaaggtgcagattgaagctaaggcggttactacc
accatcacgcagcgcatgtgccgcgtagaaggtagtgccaagctggaagcgctgtcccgc
ctgatcgaagtcgagaacatggacgccgcgatcgtcttcgtacgtacgcgtgccgcctgt
acgacggtcgttgagcacctgtctgcgcgtggcgttgcagcggcagcactgtccggcgat
ctggaccagagcctgcgcgagcgcaccgttgcgcgtctgaaacgcggcaaaattgacgtt
ctggttgcgacagacgtggccgcacgtggtcttgatgttccgcgtatcacgcacgtcatc
aactacgacctgccgcacgataccgaagcctacgttcaccgtatcggtcgtaccggtcgt
gctggacgtgaaggcacggccatcactttcgtcggtggtcgcgaaatgcgtcgcatccag
tggctggaacgtgctaccggtcagcgcatcgagtccatcgcactgcctgacgaaaaagca
ctgcgtgcgcatcgtgacgagcgcttcaaggcgcgcgctgttgaagcactgagcggcgaa
tcgtccatggcacagcgtgcactggtcgaagagctggtcgctcaaggttacgatccgctg
gatttggctactgtctttgctcagctggctcgcgctgatgaagcaccgattcgtccgctg
ccgcgtcaggacagccgtaacgaccgcaatgatcgtaacgatcgcggtggtcgtggcgag
cgtagtcctcgtggcgaacgtggcccgcgccgtgaacgcggtccgcgcgaaggcatgacg
cgctatcgcgtggccgttggccatcgtgaaggcatcaaaccggggcagctggtaggcgct
ctggcaaacgaaggtggcatcgaaggcgcgcgtatcggtcgtatcgatattcgtcagtcc
ttcagcaccgtcgagctgccgaacaacctgcctgccgctaccctagcgaaaatgggacgc
gctcgcgttgcgggtcgtacgctggatatcagtgaagacactggtcgtccggagcgtcgc
cgtgaagagcatcgtccggcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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