KEGG   Cynara cardunculus var. scolymus (artichoke): 112513752
Entry
112513752         CDS       T05604                                 
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112513752
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112513752
Enzymes [BR:ccav01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     112513752
Spliceosome [BR:ccav03041]
 Complex C
  Other components
   Step II factors
    112513752
SSDB
Motif
Pfam: RBD_DEAH11 KH_DEAH11 KH_DEAH11_1st KH_DEAH11_2nd RRM_DEAH11 Helicase_C IBR DEAD OB_NTP_bind HA2_C AAA_22 AAA_19 IBR_1 zf-C3HC4 ABC_tran Helicase_RecD ResIII AAA_29 HA2_N T2SSE
Other DBs
NCBI-GeneID: 112513752
NCBI-ProteinID: XP_024975874
Position
LG 5:complement(20346004..20352281)
AA seq 1733 aa
MSSDQLSPMYRNRASFGMKHRFFDQPHHHRRRDRPQGSPLSCTSTTHRRPNFVIELRAQN
KDHNSYNRHEIVSLMGIFKCGPDDFFIYEKGEVAARFFYQQWSNALETVVYLWDVLLNGG
LSFTPRLVRNLNVPSDTDELYSRLRVLFSDRIREFMKGELVIKWERKLEEVTNEIAKLDV
LLKKPKRVSIHSELYKKKEGHVRERTLIDRRIREFKTGMECILDYVNGKVFDTCVVKVLM
LKDNLDWSKIYWLMKRECRRLDDGLPIYADRKDILWQIYRQQIMVLIGETGSGKSTQLVQ
FLTDSGVAANKSIVCTQPRKLAAMSLANRVQEESRGCCQDNSVICSSTYSSFQPFNSKVV
YMTDHCLLQHYMNDTNFSWISCIIVDEAHERSLNTDLLLALVKKLLHRRSDLKLIIMSAT
ADAEQLAKYFDGCGTYHVVGRTFPVDIRYDPGISDASCDSRFVAPYVTDLMRRVGEIHRM
EGEGTILAFLTSQMEVEWACEQFKAPSAIALPLHGKLSHEEQYRVYLNYPEKRKVIFSTN
LAETSLTIPGVKFVVDSGMVKESRFEPSTGMNVLRICRISKSSANQRAGRAGRTEPGKCY
RLYGESDFRSMPAHQEPEIRRVNLGIAVLRILALGIHDIEGFDFIDAPSNSAIQTAIRSL
IQLGAVKLENGVYKLTKDGRNMVKLAIEPRLGKMILKSFENRLGREGVVLAAVMANSSSI
FCRVGKEEDKQKSDCLKVQFCHRNGDLFTLLAVYRKWEQVPSDKRNQWCWDNSINAKSMR
RCQEAVHEMESCLEHELNIIIPTYWHWTPEVYAESDKILKNVILSALAENVAMYTGNDSL
GYEVASTGSCVQLHPACSLLIFGERPSWVVFGEIIAMPNQYLVCVTSIDFESLHTLSPLP
FDISQINSRKLQSKVLTGFGSTLLKKFCGKSNSGMKQLLSHIKDAIKDNRIGLEVSFDHN
EVNLFASSEHMGQVSDFVNAALERDGKWLRNECLEKCLYPDRHTLPPVALVGAGAEIKHL
ELERRCLTVDIFLNGPNDVEEKELLSFLENHTAGNICGFHKFGGTSQDTDKNEKWGRVTF
LTSDAAERATKLSQFDFKGASLRVVPSRNTFGGESKFSSFPAVKAKVSWPRRPNRGYAFV
KCGSGDDALAMVKDFSDVVIGGKPIRCKQSMKDVDSVMLTGIDLDIFETELFDALSSLTS
RKIVDVSLPRGNAAEQPSVINLEEALLREISSFMPGGNSKNECVRVHIFPPEKFDYLMKA
EISFDGSLHLEAARALEQIDGKTLPGCLAWQKIKCQQQFHSSVFCPAPVYMVIKEQLHSL
LRNLKLRKVAEFFFERNENGSVRVKISAKATKIMAESRRPLEQLMNGRTIIDARLTPPVL
QLTFSREGFSVQKSIQRETGTFFLFDRHNHSFRVFGPLNKLDIAHQRLVQSLVALYESKQ
LDVHLRGATFPPDLMKKVVEKFGPNLHGLKERFPGSEFTLNTRHHIIAIRGSKELKQNVE
EMINEIAKSSAYPSKKVEGQTASCPICLCDVEDGYTLEGCNHEFCRMCLVDQCESAIKSH
DGFPMRCAHEGCNAMILLVDLKSLLLAEKMDELFKASLGHFVGCSGGKYRFCPSPDCPSI
YAVAEDGDSGRPFTCGACSVETCTRCHLEYHPFLTCERYMEFKRDPDSSLKEWMKGKEEV
KKCPVCGWTIEKFDGCNHVECRCGRHICWVCLEHYKSSEECYGHLRNIHGAIV
NT seq 5202 nt   +upstreamnt  +downstreamnt
atgagcagtgatcaactctctcctatgtacaggaacagagcctcttttgggatgaaacac
cggttttttgaccagccgcaccaccaccggagacgagatcgaccacaaggttcaccactg
tcctgcaccagcaccacccatcgtagacccaatttcgtaatcgaacttcgggctcagaac
aaagatcacaacagctataatcgtcatgaaatcgtatctttgatggggatattcaagtgc
ggccctgacgatttttttatttacgaaaagggtgaagttgcagctaggtttttctaccag
cagtggtctaatgcgcttgaaacggttgtctatttgtgggatgttttattgaacggaggt
ctctcctttacgccgaggcttgtacggaacttgaatgttccttctgatacggatgagtta
tattcgcggcttagggttttgtttagcgaccgaataagagagtttatgaaaggggagttg
gtgataaaatgggagaggaagcttgaggaagttaccaatgaaattgctaagctggatgtg
ttgctaaagaagcccaagagagtatcgatacatagtgagttatataagaagaaggaaggg
catgtacgtgagagaactttgattgataggaggattagagagtttaagactggaatggag
tgtattcttgattatgtcaatgggaaggtgtttgacacttgtgttgttaaggtgttaatg
ttgaaagataatcttgattggagcaagatttactggttgatgaagagggaatgcaggaga
cttgatgatgggttgcctatatatgctgatcggaaggacattctttggcagatttaccgt
cagcagataatggtgttgattggagagactggttcgggaaaaagtacacagctggttcag
ttccttactgattcaggagtggctgctaacaagtctatagtttgcactcagcctcgcaag
cttgctgccatgtcattggcaaatagggttcaggaagaaagccgtggttgctgccaggat
aattcagttatttgttcttcaacatactcatcttttcagccatttaactcgaaggtggta
tatatgacagatcactgcttacttcagcactacatgaatgataccaatttttcgtggatt
tcttgcatcattgttgatgaggctcatgaaagaagcctaaacaccgatcttcttttagca
ttggttaagaagttacttcatcggaggtctgatctgaagcttattataatgtctgcaaca
gctgatgcagaacagttggcgaaatattttgatggctgtggtacgtatcatgtggtgggt
agaactttcccagttgatattagatacgatcctggtatatccgatgcttcttgtgattct
cgttttgttgcaccttatgttactgatttgatgaggagggtgggggagatccatagaatg
gagggagaagggacgatccttgctttcttgacttctcaaatggaggtagaatgggcttgt
gaacagtttaaagctccatcagctattgcattgcctttgcatggaaaattgtctcatgag
gagcaataccgtgtgtatctgaattatcccgagaagagaaaagtcatattttctactaat
cttgctgagacatcgctaacaataccgggagtcaagtttgtagttgattctggcatggtt
aaggagagtaggtttgaacccagcactggcatgaatgttcttagaatttgcaggattagc
aaaagttctgctaatcaacgtgctgggcgtgctggaagaactgagcccggaaagtgttat
aggctctatggagagagcgatttcagatctatgcctgctcatcaggaacctgaaatacgt
agggttaatcttggtattgcagtcctcaggattctagctctgggtattcatgacatcgag
ggttttgatttcattgatgcgcctagcaattcagctatccagactgcaatcaggagtctt
atccagttgggtgccgttaaactggaaaatggtgtttacaagttaaccaaagatggtagg
aatatggtgaagctagcaatcgagcctaggcttggtaaaatgattttgaaaagttttgaa
aacaggttgggcagggagggggttgttcttgctgcggttatggcaaattctagcagcata
ttttgcagagttggcaaagaggaagacaagcaaaaatccgattgcctgaaggtgcaattc
tgtcatcgcaatggcgatttattcactttgctggctgtttaccggaaatgggagcaagtt
cctagtgataagagaaatcaatggtgttgggataatagcataaatgcaaaatccatgcgc
agatgccaagaagcagtgcacgaaatggaaagttgtcttgaacacgagcttaatatcatt
atccccacttactggcattggactccagaagtgtatgctgaatctgataaaattttaaaa
aatgtcatactctctgctttagccgaaaacgtagcaatgtacactggaaacgacagtctc
ggttatgaagtggcgtcaacaggaagttgcgttcagttgcatcctgcatgttctttactc
atctttggtgaaagaccaagttgggtggtctttggggaaattattgcaatgcccaatcag
tacttggtctgtgttacttccattgactttgagtcattgcatactctttccccccttcca
tttgatatttcacagatcaacagtcggaaactgcaatcaaaggttttaacaggtttcgga
agtacattactgaaaaagttttgtgggaaatccaactctggcatgaaacaacttctttcc
cacatcaaggatgccatcaaagataaccgaattgggcttgaagtttcttttgatcataat
gaagttaacttatttgcatcatccgaacacatgggacaggtctctgattttgtaaatgct
gcattggagcgtgatggaaagtggttacggaatgaatgcctggagaaatgtctgtacccc
gacaggcatacattgcctcctgtagctcttgttggtgctggtgctgaaataaagcatctg
gaactggaaagaagatgtcttacggttgatatatttcttaatggtccaaatgatgttgaa
gagaaggaacttctctcttttttggagaaccatacagctggcaacatttgtggctttcat
aagtttggtgggaccagtcaagataccgataaaaatgaaaagtggggccgggtaacgttt
cttacatccgatgctgctgagagagctacaaaattgagtcaatttgacttcaaaggcgcg
tctctgagagttgttccgtcaagaaacacatttggtggagaaagcaaattttcatcattt
cctgctgtcaaagcaaaagtgtcgtggccccgcaggcccaataggggatacgctttcgtt
aagtgtggaagtggagatgatgctttggccatggttaaggacttttcagatgtggtaatc
ggggggaagcctatacgctgcaaacagagcatgaaggatgtggacagtgttatgttgact
ggaatcgacttagatatatttgaaaccgagctttttgatgcattaagttctttaaccagt
aggaaaattgtggatgtgagccttcccagaggcaacgccgcagaacaaccctcagttatc
aatcttgaagaagcacttttgagagaaatcagttcattcatgcctggagggaattccaaa
aatgaatgtgttcgtgttcatatcttccctcccgaaaaatttgattacttaatgaaagct
gaaattagtttcgatggaagtttgcatttggaggcggcaagagctttggaacagatcgat
gggaaaacattgcccggatgtttagcatggcagaagataaaatgtcagcagcagtttcat
agcagtgttttctgccctgcacctgtttatatggttatcaaggagcaattgcattcttta
ctcagaaacctcaagcttcggaaagtagccgagttcttttttgaacggaacgagaatggt
tcagttcgtgtcaaaatatctgcaaaagctacgaaaataatggcagagtcgaggaggcct
ttggagcaacttatgaacggaaggaccataattgatgctcgcctcactccaccagtttta
caacttaccttttcacgagaaggattcagtgttcagaaatctattcaacgtgaaacaggt
acttttttcctcttcgacaggcataaccatagcttcagagtttttggtccgttaaataag
ctcgatattgcacatcagagattggttcagtcccttgttgcactttatgaaagcaagcaa
cttgatgttcatcttagaggagccactttcccacctgatctaatgaagaaggtggtcgaa
aagtttgggcccaatcttcacgggctcaaggaaagattccctggatcagagttcacgctg
aacactcggcatcatatcatagccattcgtggtagtaaagaattgaagcaaaacgttgaa
gaaatgataaatgagatcgcaaagagcagtgcttatcctagtaaaaaagtggaaggtcag
actgcctcctgtcccatatgtctgtgtgacgtcgaggatggttacaccctcgaagggtgt
aaccacgagttctgccggatgtgtttagtggatcaatgcgaatccgccatcaagagccac
gatggttttccaatgcggtgtgcccacgagggttgtaacgcgatgattttactggtggac
ctcaaatcgctattattagcagagaaaatggacgaacttttcaaagcatctttggggcat
tttgtgggatgtagcggtgggaagtatcggttttgcccgtcacccgactgtccatcgatt
tacgcggtggcagaagacggggattctgggcggccgtttacatgtggggcatgttctgtg
gaaacgtgtactcgatgccacctggagtaccatccgtttctgacgtgtgaaagatatatg
gagtttaagcgggacccagattcgtcgttgaaagagtggatgaaggggaaggaagaggtg
aagaaatgtccggtttgtgggtggacgatcgagaagtttgatgggtgcaaccatgtggag
tgcaggtgcgggcgacacatttgctgggtgtgccttgagcattataagagcagtgaagag
tgctatggccatttgaggaacatacatggtgcaatcgtttaa

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (20)   
   Pfam (20)   
All databases (31)   

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