KEGG   Komagataella phaffii: PAS_chr1-1_0019
Entry
PAS_chr1-1_0019   CDS       T01092                                 
Name
(RefSeq) Component of the TREX complex required for nuclear mRNA export
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
ppa  Komagataella phaffii
Pathway
ppa03013  Nucleocytoplasmic transport
ppa03015  mRNA surveillance pathway
ppa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PAS_chr1-1_0019
  09122 Translation
   03013 Nucleocytoplasmic transport
    PAS_chr1-1_0019
   03015 mRNA surveillance pathway
    PAS_chr1-1_0019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr1-1_0019
   03041 Spliceosome [BR:ppa03041]
    PAS_chr1-1_0019
Enzymes [BR:ppa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PAS_chr1-1_0019
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PAS_chr1-1_0019
Spliceosome [BR:ppa03041]
 Complex C
  Other components
   EJC/TREX
    PAS_chr1-1_0019
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PAS_chr1-1_0019
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 8197536
NCBI-ProteinID: XP_002489653
UniProt: C4QVU9
Position
1:join(572961..573189,573344..574425)
AA seq 436 aa
MSHEGEEELLDYSDSEEIAVAPSGTTTADKEAGEDGKEANKKGSYVGVHATGFQDFLLRP
ELTRAIRDCGFEHPSEVQQVCIPQSILGNDVLCQAKSGLGKTAVFVLSTLQQLDPSPGEV
SVLVICNTRELAYQIKNEYARFSKYMPEVKTEVFYGGTQIAKDEEILKNKDTCPHIVVAT
PGRLNALVRDKVMNVKNVKNFVIDECDKVLENLSMRRDVQSIFRETPFQKQVMMFSATLS
TEMRKICKKFMQNPLEIYVDNEAKLTLHGLQQYYIKLTEADKNRKLSELLDSLDFNQVII
FVKSVKRAEYLNRLLNENNFPSISIHSGLPQQERIERYKSFKEFNKRICVATDVLGRGID
VERINLAINYDLPNESAQYLHRVGRAGRFGTKGLAISFISSDEDNTILEQIQDRFDVKIA
EFPAEGVDASTYMSTA
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgtcccacgaaggagaagaagagcttttggattactccgattccgaagaaatcgccgtt
gctccatccggaacaaccactgctgacaaggaagctggagaagatggaaaagaagccaac
aaaaagggttcttacgttggagttcacgccaccggattccaggacttcttgttgagacca
gagttaaccagagctatcagagactgtggttttgagcatccttccgaagtccaacaggtg
tgtatccctcaatccatcctgggtaacgacgttctatgtcaagccaagtctggtttgggt
aagactgctgttttcgtattatcgactttgcagcaattggacccttctccaggcgaagta
tccgttttggttatctgtaacacaagggaactggcctaccaaattaagaatgaatatgct
cgtttctccaagtatatgcctgaggtcaaaactgaggtcttttacggaggaacccagatt
gccaaggacgaagaaattctcaaaaacaaggacacttgccctcacattgtagtagctact
cctggtagattgaacgccttagttcgagacaaggtgatgaacgtcaagaacgtcaaaaac
tttgttatcgacgagtgtgacaaggttctagagaacctgagcatgagaagagatgttcag
tctattttccgtgagactcctttccagaagcaagttatgatgttttctgctactctttca
actgagatgagaaagatctgtaaaaagttcatgcagaaccctctagaaatctatgttgac
aacgaagccaagttaactttgcacggtcttcaacagtactatatcaagctgaccgaggct
gataagaatagaaaattgagtgagctgttggattctctggacttcaaccaggtcataatc
tttgttaagagtgtcaagagagcagaatacttgaaccgtttgttaaatgagaacaatttc
ccttctatctccatccattctggtttgcctcaacaggaacgtattgaacgttacaagtcg
ttcaaagagttcaacaagcgtatttgtgttgccactgacgtcttgggtagaggtatcgat
gttgagagaattaatctggccatcaattacgatctgccaaacgaatctgctcagtatctg
cacagagttggtagagctggtagattcggtaccaagggtcttgccatttccttcatctct
tctgatgaagataacaccattttggaacaaattcaagacagattcgacgtcaagattgct
gaatttccagctgagggtgttgatgcttctacttatatgtctactgcttag

  All links  
Gene (25)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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