KEGG   Paramecium tetraurelia: GSPATT00005317001
Entry
GSPATT00005317001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03013  Nucleocytoplasmic transport
ptm03015  mRNA surveillance pathway
ptm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSPATT00005317001
  09122 Translation
   03013 Nucleocytoplasmic transport
    GSPATT00005317001
   03015 mRNA surveillance pathway
    GSPATT00005317001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00005317001
   03041 Spliceosome [BR:ptm03041]
    GSPATT00005317001
Enzymes [BR:ptm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GSPATT00005317001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     GSPATT00005317001
Spliceosome [BR:ptm03041]
 Complex C
  Other components
   EJC/TREX
    GSPATT00005317001
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    GSPATT00005317001
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UvrD-helicase CMS1 Cas3-like_C_2 AAA_19 AAA_30 IL7
Other DBs
NCBI-GeneID: 5013749
NCBI-ProteinID: XP_001427965
Genoscope: GSPATT00005317001
UniProt: A0BPV0
Position
undetermined
AA seq 471 aa
MSVIILILFIKDFDINSRKQRENAYLNRSFLIRILFIQIFYQKSSALMDDIPDFKEEQQP
TGKDIQIDNYNVSQFKNFGLKEELLRAVKEAGFEHPTRVQAESLTNALLGEQLICQAKAG
TGKTAVFVLTVLNTINTESNKVECLVITHTRELAQQARDEFLRLGKFMKSVKVECFYGGG
EPVSVNIQTIETVKPQIVVGTPGRLKDLICERKALKVDRLKYFILDEADTMIEDLNMRKD
IQDIFLKSPQEKQFMAFSATFTESSRTSLKRFIADNKHIYEITIKPEQLFLDKLKQYYMK
MPEALKFHYLRQILNTCKLNQCIIFVKSSEKADALVTELKKKGEESVRQLYGGNRLGPDH
QKMRQKTYEQFRNGHFRLLVATNLMGRGIDIDKVNYVINFDMPDSLETYLHRVGRAGRQE
TNGVAISFVKSEEEASDGKKQTDDEVLQQILKQYPDKLQQLPQDLSTLDKF
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgagtgtgattatattaattttattcattaaagattttgatattaattctcgaaaacag
agggaaaatgcatatttaaatagaagctttttaattaggatattatttatataaatcttt
tatcaaaagagcagcgcattaatggacgatattcctgattttaaagaagaacaatagcca
actggcaaagacatataaattgacaattacaatgtctcttaatttaaaaactttgggctt
aaagaggagctcttgagagcagttaaagaagctggatttgagcatccaacaagagtccaa
gctgagtcattgacaaatgctttgttaggggaataattgatctgctaagcaaaggctgga
actggaaagactgctgtgtttgtgctgaccgtgttaaatactataaatacagaaagtaat
aaagttgaatgcctcgtaattacacatacaagagagttggcccaataggcccgagatgaa
tttttgagattgggaaagtttatgaaaagcgtgaaagtggaatgcttctatggtggaggt
gaacctgtatctgtgaatatctaaactatcgagactgtgaagccataaatagtagttggt
actccaggacgtcttaaggatctgatttgcgagagaaaagcattgaaagtggatagattg
aagtactttatcttggatgaagccgatacaatgattgaagatttgaacatgagaaaggac
atttaggacatctttttaaagtcaccataggagaaataatttatggcatttagtgcaaca
ttcacagaatcaagtagaacatcattgaaaagatttattgctgacaataaacatatttat
gaaattactattaaaccagaataactctttttagacaaattaaagcaatattatatgaag
atgccagaagcactcaaattccattatttgagataaatcttaaacacctgcaaactaaac
taatgcataatatttgttaagagttctgagaaggctgatgctttggtcactgaactaaag
aagaagggggaagagtctgttagacaactatatggtggtaatagactaggtcctgatcat
taaaaaatgagataaaaaacctatgaataattcagaaatggtcatttccgattgttagtg
gctactaacttgatgggaagaggtattgatattgataaagtcaattatgttatcaatttt
gatatgcctgattctttggagacctatttgcatagagtaggaagagcaggaagataagag
actaatggtgttgctatctcattcgttaaatcagaagaagaagcaagtgatggaaaaaaa
taaacagatgacgaagtcttataataaatccttaaacaatatcctgataagttataataa
ttgccttaagatttgtctacattagataagttctga

  All links  
Gene (10)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   GENOSCOPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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