KEGG   Puccinia triticina (wheat leaf rust): PtA15_10A301
Entry
PtA15_10A301      CDS       T09180                                 
Name
(RefSeq) uncharacterized protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
ptrc  Puccinia triticina (wheat leaf rust)
Pathway
ptrc03013  Nucleocytoplasmic transport
ptrc03015  mRNA surveillance pathway
ptrc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptrc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PtA15_10A301
  09122 Translation
   03013 Nucleocytoplasmic transport
    PtA15_10A301
   03015 mRNA surveillance pathway
    PtA15_10A301
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptrc03019]
    PtA15_10A301
   03041 Spliceosome [BR:ptrc03041]
    PtA15_10A301
Enzymes [BR:ptrc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PtA15_10A301
Messenger RNA biogenesis [BR:ptrc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PtA15_10A301
Spliceosome [BR:ptrc03041]
 Complex C
  Other components
   EJC/TREX
    PtA15_10A301
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PtA15_10A301
SSDB
Motif
Pfam: DEAD ResIII CMS1 DUF6329
Other DBs
NCBI-GeneID: 77801359
NCBI-ProteinID: XP_053024435
Position
10A:complement(join(3071651..3071666,3071765..3071825,3071897..3072307,3072383..3072462,3072528..3072559,3072623..3072645,3072728..3072755))
AA seq 216 aa
MAEHAEDLIDYDEDDAGDQKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPSEVQQECI
PQAILGMDVLCQAKSGMGKTAVFVTATLQQMDPKDGEVSMLVLCHTRELAYQIKNEYARF
SKYMPDIRTAVVYGGISIKQDAEMLKAKDKCPHILVGTPGRLNALVRDGLLKCNTVRTFV
LDECDKMLESVDMRRDVQQVFLATPHAKQVMIHIPG
NT seq 651 nt   +upstreamnt  +downstreamnt
atggccgaacacgctgaagatctcattgactacgacgaggacgacgccggcgaccagaag
ggctcctacgtcggcatccactccaccggcttccgcgacttcctcttgaagcccgagctg
ctgcgagccatcagcgacctcggcttcgaacatccctccgaagtccaacaggaatgcatc
ccccaggccatcctgggcatggatgtgctctgccaggccaagtcgggcatgggcaagacc
gccgtcttcgtcaccgccaccctgcagcagatggaccccaaggacggcgaggtgtcgatg
ctcgtgctctgccacacccgcgagctggcctaccagatcaagaacgagtatgcccgcttc
agcaagtacatgcccgacatccgcaccgccgtcgtctacgggggcatctccatcaagcag
gacgcggagatgctcaaggccaaggataaatgcccccacatcctcgtcggcacccccggc
agactcaacgcgctcgtcagagacggcttgctgaagtgcaacaccgtcaggaccttcgtc
ctcgacgagtgcgacaagatgctcgaatccgtcgacatgcggcgcgacgtccagcaagtc
ttcctcgccaccccgcatgccaagcaggtcatgatacacatccctggttaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (8)   

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