KEGG   Salvelinus sp. IW2-2015 (Arctic char): 112068840
Entry
112068840         CDS       T05762                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013  Nucleocytoplasmic transport
salp03015  mRNA surveillance pathway
salp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112068840
  09122 Translation
   03013 Nucleocytoplasmic transport
    112068840
   03015 mRNA surveillance pathway
    112068840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    112068840
   03041 Spliceosome [BR:salp03041]
    112068840
Enzymes [BR:salp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     112068840
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     112068840
Spliceosome [BR:salp03041]
 Complex C
  Other components
   EJC/TREX
    112068840
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112068840
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2 AAA_19
Other DBs
NCBI-GeneID: 112068840
NCBI-ProteinID: XP_023991824
Position
Unknown
AA seq 375 aa
MTEQDVENELLDYEEEDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRILALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRY
NT seq 1128 nt   +upstreamnt  +downstreamnt
atgactgagcaggatgtggagaatgagctcttggactatgaggaggaggatgtggtggga
gatctatcaggaggggacattctgtccattaaaaaggagcgtgtgaagggctcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcctgagctgctgagggcgata
gtggactgtggctttgagcatccctctgaggttcaacatgagtgcatccctcaggccatc
ctgggtatggatgtgctgtgccaggctaagtctggtatgggcaagacggccgtgtttgtc
ctggccacactacagcagctggagcctgtcactggacaagtgtccgtgctggtgatgtgt
cacacccgagagctggcgtttcagatcagcaaggagtatgagagattctccaagtacatg
ccgactatcaaggtggcagtgttctttggtggcctgtctataaagaaggacgaggaggtg
ttgaagaaggagtgtccccatgtggtggtggggacgccggggcgaatcctggccctgatc
cgcaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttggaacaacttgacatgcgccgagacgtccaggagatattccgtctgaccccccat
gagaaacaggtcatgatgttcagcgccaccctgagcaaagagattcgccccgtctgccga
aagttcatgcaagatccgatggaaatctttgttgatgatgagaccaagctgactctccac
gggctgcagcagtactacgtcaaactgaaggacaacgagaagaacaggaagctctttgat
ctcctcgacgtgctggaattcaaccaggtggtgatctttgtgaagtccgtgcagcgctgt
gtggctctggcccagctgttggttgagcagaacttcccggctattgccatccaccgcggg
atgcctcaggaggaacgtctctctcgttaccaacaatttaaagacttccagagacgtatc
ctggtggccaccaacctgtttggcagagggatggacatcgagagggtcaacatcgccttc
aactacgacatgccagaagactctgacacgtacctgcacagatattaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (10)   

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