KEGG Orthology (KO) - Photorhabdus laumondii subsp. laumondii DSPV002N

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     KO
 09100 Metabolism
 
   09101 Carbohydrate metabolism
 
   09102 Energy metabolism
 
   09103 Lipid metabolism
 
   09104 Nucleotide metabolism
 
   09105 Amino acid metabolism
 
   09106 Metabolism of other amino acids
     00410 beta-Alanine metabolism [PATH:plum00410]
     00430 Taurine and hypotaurine metabolism [PATH:plum00430]
     00440 Phosphonate and phosphinate metabolism
     00450 Selenocompound metabolism [PATH:plum00450]
       A4R40_23670 cystathionine gamma-synthase
       A4R40_19600 cystathionine beta-lyase
       A4R40_18560 aminotransferase
       A4R40_21930 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase
       A4R40_02595 cystathionine beta-lyase
       A4R40_13025 cysteine sulfinate desulfinase
       A4R40_08095 thioredoxin-disulfide reductase
       A4R40_03550 cysN; sulfate adenylyltransferase subunit CysN
       A4R40_03545 sulfate adenylyltransferase small subunit
       A4R40_12680 selenide,water dikinase SelD
       A4R40_24325 L-seryl-tRNA(Sec) selenium transferase
       A4R40_21150 hypothetical protein
       A4R40_07870 metG; methionine--tRNA ligase
K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
K01008 selD; selenide, water dikinase [EC:2.7.9.3]
K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
     00460 Cyanoamino acid metabolism [PATH:plum00460]
     00470 D-Amino acid metabolism [PATH:plum00470]
     00480 Glutathione metabolism [PATH:plum00480]
 
   09107 Glycan biosynthesis and metabolism
 
   09108 Metabolism of cofactors and vitamins
 
   09109 Metabolism of terpenoids and polyketides
 
   09110 Biosynthesis of other secondary metabolites
 
   09111 Xenobiotics biodegradation and metabolism
 
   09112 Not included in regular maps
 
 09120 Genetic Information Processing
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:plum03000]
     03021 Transcription machinery [BR:plum03021]
     03019 Messenger RNA biogenesis [BR:plum03019]
     03041 Spliceosome
     03011 Ribosome [BR:plum03011]
     03009 Ribosome biogenesis [BR:plum03009]
     03016 Transfer RNA biogenesis [BR:plum03016]
       A4R40_19520 ribonuclease
       A4R40_19745 multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
       A4R40_21350 RNA-splicing ligase RtcB
       A4R40_07010 gltX; glutamate--tRNA ligase
       A4R40_03430 proline--tRNA ligase
       A4R40_02935 ileS; isoleucine--tRNA ligase
       A4R40_06485 leuS; leucine--tRNA ligase
       A4R40_21150 hypothetical protein
       A4R40_07870 metG; methionine--tRNA ligase
       A4R40_06590 glutamine--tRNA ligase
       A4R40_10495 arginine--tRNA ligase
       A4R40_17650 lysS; lysine--tRNA ligase
       A4R40_10565 aspartate--tRNA ligase
       A4R40_00930 hypothetical protein
       A4R40_06175 alanine--tRNA ligase
       A4R40_08840 asparagine--tRNA ligase
       A4R40_13290 thrS; threonine--tRNA ligase
       A4R40_08120 serine--tRNA ligase
       A4R40_18930 cysS; cysteine--tRNA ligase
       A4R40_22195 valine--tRNA ligase
       A4R40_06880 hisS; histidine--tRNA ligase
       A4R40_13270 phenylalanine--tRNA ligase subunit alpha
       A4R40_13265 pheT; phenylalanine--tRNA ligase subunit beta
       A4R40_00975 tyrosine--tRNA ligase
       A4R40_12905 tyrosine--tRNA ligase
       A4R40_00415 tryptophan--tRNA ligase
       A4R40_01185 D-tyrosyl-tRNA(Tyr) deacylase
       A4R40_14085 histidine triad nucleotide-binding protein
       A4R40_05780 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB
       A4R40_03435 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
       A4R40_15845 truA; tRNA pseudouridine(38,39,40) synthase TruA
       A4R40_22410 truB; tRNA pseudouridine(55) synthase TruB
       A4R40_03575 truD; tRNA pseudouridine(13) synthase TruD
       A4R40_15510 nitrogen fixation protein NifS
       A4R40_16400 cysteine desulfurase IscS
       A4R40_04575 cysteine desulfurase IscS
       A4R40_23185 hypothetical protein
       A4R40_23305 L-threonylcarbamoyladenylate synthase TsaC
       A4R40_22700 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
       A4R40_24365 trmE; tRNA uridine(34) 5-carboxymethylaminomethyl synthesis GTPase MnmE
       A4R40_00225 tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG
       A4R40_12680 selenide,water dikinase SelD
       A4R40_22580 3'(2'),5'-bisphosphate nucleotidase CysQ
       A4R40_24380 rnpA; ribonuclease P protein component
       A4R40_12940 ribonuclease T
       A4R40_24210 rph; ribonuclease PH
       A4R40_11890 exoribonuclease II
       A4R40_10705 ribonuclease D
       A4R40_02750 energy-dependent translational throttle protein EttA
       A4R40_19530 hypothetical protein
       A4R40_01425 glycine--tRNA ligase subunit alpha
       A4R40_01430 glyS; glycine--tRNA ligase subunit beta
       A4R40_04370 tRNA glutamyl-Q synthetase
       A4R40_19040 aminoacyl-tRNA deacylase
       A4R40_07910 hypothetical protein
       A4R40_16565 tRNA adenosine(34) deaminase TadA
       A4R40_21625 tRNA dihydrouridine synthase DusA
       A4R40_20290 tRNA dihydrouridine synthase DusB
       A4R40_07685 tRNA dihydrouridine synthase DusC
       A4R40_06530 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
       A4R40_10545 tRNA (uridine-5-oxyacetic acid methyl ester)(34) synthase TrmP
       A4R40_10540 tRNA 5-methoxyuridine(34) synthase CmoB
       A4R40_08275 S-adenosyl-L-methionine-dependent methyltransferase
       A4R40_23575 tRNA (uridine(54)-C5)-methyltransferase TrmA
       A4R40_06240 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD
       A4R40_06340 methyltransferase
       A4R40_16410 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
       A4R40_24035 tRNA (cytosine(34)-2'-O)-methyltransferase TrmL
       A4R40_16695 tRNA (adenosine(37)-N6)-methyltransferase TrmM
       A4R40_03290 tRNA pseudouridine(65) synthase TruC
       A4R40_03035 bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA
       A4R40_13980 mnmA; tRNA 2-thiouridine(34) synthase MnmA
       A4R40_12805 tRNA 2-thiocytidine(32) synthetase TtcA
       A4R40_20395 tRNA 2-thiouridine(34) synthase TusA
       A4R40_02095 tRNA 2-thiouridine(34) synthase TusB
       A4R40_02090 tRNA 2-thiouridine(34) synthase TusC
       A4R40_02085 tRNA 2-thiouridine(34) synthase TusD
       A4R40_08975 sulfur relay protein TusE
       A4R40_16390 iscA; iron-sulfur cluster assembly protein IscA
       A4R40_17690 ygfZ; tRNA-modifying protein YgfZ
       A4R40_03615 tRNA hydroxylase
       A4R40_15905 mnmC; bifunctional tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MnmD/FAD-dependent cmnm(5)s(2)U34 oxidoreductase MnmC
       A4R40_19415 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
       A4R40_19210 7-cyano-7-deazaguanine synthase QueC
       A4R40_13930 queuosine biosynthesis protein
       A4R40_03510 6-carboxytetrahydropterin synthase QueD
       A4R40_03505 7-carboxy-7-deazaguanine synthase QueE
       A4R40_03275 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF
       A4R40_22720 tRNA epoxyqueuosine(34) reductase QueG
       A4R40_02540 hypothetical protein
       A4R40_19410 tgt; tRNA guanosine(34) transglycosylase Tgt
       A4R40_19315 tRNA 4-thiouridine(8) synthase ThiI
       A4R40_03415 tilS; tRNA lysidine(34) synthetase TilS
       A4R40_13575 tRNA cytosine(34) acetyltransferase TmcA
       A4R40_10690 tRNA N6-adenosine(37)-N6-threonylcarbamoyltransferase complex dimerization subunit TsaB
       A4R40_19765 tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD
       A4R40_03210 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA
       A4R40_22665 exoribonuclease R
       A4R40_22400 polyribonucleotide nucleotidyltransferase
K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
K01008 selD; selenide, water dikinase [EC:2.7.9.3]
K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
K03683 rnt; ribonuclease T [EC:3.1.13.-]
K00989 rph; ribonuclease PH [EC:2.7.7.56]
K01147 rnb; exoribonuclease II [EC:3.1.13.1]
K03684 rnd; ribonuclease D [EC:3.1.13.5]
K06020 ettA; energy-dependent translational throttle protein EttA
K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
K07237 tusB; tRNA 2-thiouridine synthesizing protein B
K07236 tusC; tRNA 2-thiouridine synthesizing protein C
K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
K13628 iscA; iron-sulfur cluster assembly protein
K06980 ygfZ; tRNA-modifying protein YgfZ
K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
K12573 rnr; ribonuclease R [EC:3.1.13.1]
K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
     03012 Translation factors [BR:plum03012]
     03110 Chaperones and folding catalysts [BR:plum03110]
     04131 Membrane trafficking [BR:plum04131]
     04121 Ubiquitin system
     03051 Proteasome [BR:plum03051]
     03032 DNA replication proteins [BR:plum03032]
     03036 Chromosome and associated proteins [BR:plum03036]
     03400 DNA repair and recombination proteins [BR:plum03400]
     03029 Mitochondrial biogenesis [BR:plum03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: April 24, 2024