KEGG BRITE: KEGG Orthology (KO) - Yersinia ruckeri YRB

KEGG Orthology (KO) - Yersinia ruckeri YRB

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 09100 Metabolism

   09101 Carbohydrate metabolism

   09102 Energy metabolism

   09103 Lipid metabolism

   09104 Nucleotide metabolism

   09105 Amino acid metabolism

   09106 Metabolism of other amino acids

   09107 Glycan biosynthesis and metabolism

   09108 Metabolism of cofactors and vitamins

     00730 Thiamine metabolism [PATH:yru00730]

     00740 Riboflavin metabolism [PATH:yru00740]

     00750 Vitamin B6 metabolism [PATH:yru00750]

     00760 Nicotinate and nicotinamide metabolism [PATH:yru00760]

       BD65_1089 nadB; L-aspartate oxidase
       BD65_3049 nadA; quinolinate synthetase complex, A subunit
       BD65_2574 nadC; nicotinate-nucleotide diphosphorylase
       BD65_2478 deoD; purine nucleoside phosphorylase
       BD65_2482 nadR; trifunctional NAD biosynthesis/regulator protein NadR
       BD65_2878 hypothetical protein
       BD65_2638 surE; 5'/3'-nucleotidase SurE
       BD65_2993 HAD hydrolase, IA, variant 1 family protein
       BD65_2969 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase
       BD65_2618 MazG family protein
       BD65_1640 NADH pyrophosphatase-like rudimentary NUDIX domain protein
       BD65_1065 nadE; NAD+ synthetase
       BD65_2708 ygaD; protein YgaD
       BD65_230 isochorismatase family protein
       BD65_79 sir2 family protein
       BD65_1097 ATP-NAD kinase family protein
       BD65_1811 pyridine nucleotide-disulfide oxidoreductase family protein
       BD65_364 pntA; NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
       BD65_363 pntB; NAD(P) transhydrogenase subunit beta
       BD65_1536 succinate-semialdehyde dehydrogenase family protein

K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
K03517 nadA; quinolinate synthase [EC:2.5.1.72]
K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]

     00770 Pantothenate and CoA biosynthesis [PATH:yru00770]

     00780 Biotin metabolism [PATH:yru00780]

     00785 Lipoic acid metabolism [PATH:yru00785]

     00790 Folate biosynthesis [PATH:yru00790]

     00670 One carbon pool by folate [PATH:yru00670]

     00830 Retinol metabolism

     00860 Porphyrin metabolism [PATH:yru00860]

     00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:yru00130]

   09109 Metabolism of terpenoids and polyketides

   09110 Biosynthesis of other secondary metabolites

   09111 Xenobiotics biodegradation and metabolism

   09112 Not included in regular maps

 09120 Genetic Information Processing

 09130 Environmental Information Processing

 09140 Cellular Processes

 09150 Organismal Systems

 09160 Human Diseases

 09180 Brite Hierarchies

   09181 Protein families: metabolism

   09182 Protein families: genetic information processing

     03000 Transcription factors [BR:yru03000]

       BD65_608 chbR; HTH-type transcriptional regulator ChbR
       BD65_2488 rob; right origin-binding protein
       BD65_111 helix-turn-helix domain protein
       BD65_1209 gcvA; glycine cleavage system transcriptional activator
       BD65_1786 bacterial regulatory helix-turn-helix, lysR family protein
       BD65_1698 bacterial regulatory helix-turn-helix, lysR family protein
       BD65_2504 nhaR; transcriptional activator protein nhaR
       BD65_1810 oxyR; hydrogen peroxide-inducible activator
       BD65_1286 iciA; chromosome initiation inhibitor
       BD65_2541 bacterial regulatory helix-turn-helix, lysR family protein
       BD65_295 cysB; HTH-type transcriptional regulator CysB
       BD65_1540 bacterial regulatory helix-turn-helix, lysR family protein
       BD65_1795 bacterial regulatory helix-turn-helix, lysR family protein
       BD65_3189 deoR-like helix-turn-helix domain protein
       BD65_2123 glpR; glycerol-3-phosphate regulon repressor
       BD65_2435 deoR-like helix-turn-helix domain protein
       BD65_3141 bacterial regulatory s, lacI family protein
       BD65_1967 bacterial regulatory s, lacI family protein
       BD65_1235 bacterial regulatory s, lacI family protein
       BD65_1839 bacterial regulatory s, lacI family protein
       BD65_2545 fruR; fructose repressor
       BD65_1526 treR; trehalose operon repressor
       BD65_442 bacterial regulatory s, lacI family protein
       BD65_2111 gntR; HTH-type transcriptional regulator gntR
       BD65_129 hutC; histidine utilization repressor
       BD65_212 fadR; fatty acid metabolism transcriptional regulator FadR
       BD65_2579 pdhR; pyruvate dehydrogenase complex repressor
       BD65_1469 bacterial regulatory s, gntR family protein
       BD65_2855 acrR; HTH-type transcriptional regulator AcrR
       BD65_1925 slmA; HTH-type protein slmA
       BD65_434 nemR; HTH-type transcriptional repressor nemR
       BD65_1809 fabR; HTH-type transcriptional repressor fabR
       BD65_3092 bacterial regulatory s, tetR family protein
       BD65_1978 asnC; regulatory protein AsnC
       BD65_3229 lrp; leucine-responsive regulatory protein
       BD65_2843 asnC-type helix-turn-helix domain protein
       BD65_92 bacterial regulatory s, luxR family protein
       BD65_2126 bacterial regulatory s, luxR family protein
       BD65_429 winged helix DNA-binding domain protein
       BD65_1147 winged helix DNA-binding domain protein
       BD65_2894 cueR; Cu(I)-responsive transcriptional regulator
       BD65_2235 zntR; Zn(II)-responsive transcriptional regulator
       BD65_3002 fur; ferric uptake regulation protein
       BD65_1581 ferric uptake regulator family protein
       BD65_1621 iclR; acetate operon repressor
       BD65_516 kdgR; pectin degradation repressor protein kdgR
       BD65_2178 bacterial regulatory s, crp family protein
       BD65_360 fnr; fumarate and nitrate reduction regulatory protein
       BD65_751 crp-like helix-turn-helix domain protein
       BD65_1049 iscR; iron-sulfur cluster assembly transcription factor IscR
       BD65_2300 nsrR; HTH-type transcriptional repressor nsrR
       BD65_191 SIS domain protein
       BD65_1665 birA; bifunctional protein BirA
       BD65_1560 fis; DNA-binding protein fis
       BD65_2486 trpR; trp operon repressor
       BD65_2333 winged helix-turn-helix DNA-binding family protein
       BD65_2534 bacterial extracellular solute-binding s, 5 Middle family protein
       BD65_2482 nadR; trifunctional NAD biosynthesis/regulator protein NadR
       BD65_1718 sugar diacid recognition family protein
       BD65_3062 ModE molybdate transport repressor domain protein
       BD65_1836 met Apo-repressor, MetJ family protein
       BD65_658 delta-1-pyrroline-5-carboxylate dehydrogenase
       BD65_2830 bolA; protein BolA
       BD65_1681 rfaH; transcription elongation factor/antiterminator RfaH
       BD65_2331 argR; arginine repressor
       BD65_2994 marR family protein
       BD65_333 ROK family protein
       BD65_2044 mtlR; mannitol operon repressor
       BD65_398 tyrR; transcriptional regulatory protein tyrR
       BD65_656 hypothetical protein
       BD65_988 gcvR; glycine cleavage system transcriptional repressor
       BD65_407 pspF; psp operon transcriptional activator
       BD65_404 pspC; phage shock protein C
       BD65_2460 AAA domain family protein
       BD65_1530 hypothetical protein
       BD65_1109 prophage CP4-57 regulatory family protein
       BD65_2407 prophage CP4-57 regulatory family protein
       BD65_1432 prophage CP4-57 regulatory family protein
       BD65_1305 hypothetical protein
       BD65_2602 dksA; RNA polymerase-binding protein DksA
       BD65_2804 nrdR; transcriptional regulator NrdR
       BD65_2771 crl; sigma factor-binding protein crl
       BD65_2547 mraZ family protein

K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
K07506 K07506; AraC family transcriptional regulator
K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
K02529 galR; LacI family transcriptional regulator, galactose operon repressor
K02529 galR; LacI family transcriptional regulator, galactose operon repressor
K02529 galR; LacI family transcriptional regulator, galactose operon repressor
K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
K05501 slmA; TetR/AcrR family transcriptional regulator
K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
K07724 ner; Ner family transcriptional regulator
K11925 sgrR; SgrR family transcriptional regulator
K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
K02647 cdaR; carbohydrate diacid regulator
K02019 modE; molybdate transport system regulatory protein
K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
K05785 rfaH; transcriptional antiterminator RfaH
K03402 argR; transcriptional regulator of arginine metabolism
K02565 nagC; N-acetylglucosamine repressor
K15545 mlc; transcriptional regulator of PTS gene
K02562 mtlR; mannitol operon repressor
K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
K03765 cadC; transcriptional activator of cad operon
K03567 gcvR; glycine cleavage system transcriptional repressor
K03974 pspF; psp operon transcriptional activator
K03973 pspC; phage shock protein C
K05880 dhaR; transcriptional activator for dhaKLM operon
K06140 rnk; regulator of nucleoside diphosphate kinase
K07733 alpA; prophage regulatory protein
K07733 alpA; prophage regulatory protein
K07733 alpA; prophage regulatory protein
K07735 algH; putative transcriptional regulator
K06204 dksA; RNA polymerase-binding transcription factor
K07738 nrdR; transcriptional repressor NrdR
K11926 crl; sigma factor-binding protein Crl
K03925 mraZ; transcriptional regulator MraZ

     03021 Transcription machinery [BR:yru03021]

     03019 Messenger RNA biogenesis [BR:yru03019]

     03041 Spliceosome

     03011 Ribosome [BR:yru03011]

     03009 Ribosome biogenesis [BR:yru03009]

     03016 Transfer RNA biogenesis [BR:yru03016]

     03012 Translation factors [BR:yru03012]

     03110 Chaperones and folding catalysts [BR:yru03110]

     04131 Membrane trafficking [BR:yru04131]

     04121 Ubiquitin system [BR:yru04121]

     03051 Proteasome [BR:yru03051]

     03032 DNA replication proteins [BR:yru03032]

     03036 Chromosome and associated proteins [BR:yru03036]

     03400 DNA repair and recombination proteins [BR:yru03400]

     03029 Mitochondrial biogenesis [BR:yru03029]

   09183 Protein families: signaling and cellular processes

   09185 Viral protein families

   09184 RNA family

 09190 Not Included in Pathway or Brite

[ KO | BRITE | KEGG2 | KEGG ]
Last updated: April 24, 2024