KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pfo00010 pfo01200 pfo01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pfo00010 pfo01200 pfo01230 pfo01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pfo00010 pfo00020 pfo01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pfo00010 pfo00020 pfo00620 pfo00785 pfo01200 pfo01210 pfo01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pfo00020 pfo01200 pfo01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pfo00020 pfo01200 pfo01210 pfo01230 pfo01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pfo00020 pfo01200 pfo01210 pfo01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pfo00030 pfo01200 pfo01100 pfo01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pfo00030 pfo01200 pfo01100 pfo01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pfo00030 pfo01200 pfo01230 pfo01100 pfo01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pfo00030 pfo00230 pfo01200 pfo01230 pfo01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pfo00030 pfo01200 pfo01100 pfo01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: pfo00040 pfo01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: pfo00052 pfo01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: pfo00052 pfo01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: pfo00500 pfo01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: pfo00500 pfo01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pfo00520 pfo01250 pfo01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: pfo00520 pfo00052 pfo01250 pfo01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: pfo00520 pfo01250 pfo01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: pfo00520 pfo01250 pfo01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: pfo00520 pfo01100]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: pfo00280 pfo00630 pfo00640 pfo01200 pfo01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: pfo00562 pfo01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: pfo00562 pfo01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: pfo00562 pfo01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: pfo01100]
M00103 Cholecalciferol biosynthesis [PATH: pfo01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: pfo01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: pfo01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: pfo01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: pfo01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pfo00400 pfo01230 pfo01100 pfo01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: pfo00400 pfo01230 pfo01100 pfo01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: pfo00400 pfo01230 pfo01100 pfo01110]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: pfo00400 pfo01230 pfo01100 pfo01110]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: pfo00350 pfo01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: pfo00350 pfo01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: pfo00350 pfo01100]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: pfo00380 pfo01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: pfo00380 pfo01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00073 N-glycan precursor trimming [PATH:pfo01100]
M00075 N-glycan biosynthesis, complex type [PATH:pfo01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH:pfo01100]
M00065 GPI-anchor biosynthesis, core oligosaccharide [PATH:pfo01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH:pfo01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH:pfo01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH:pfo01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pfo00740 pfo01240 pfo01100 pfo01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pfo00750 pfo01240 pfo01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pfo00760 pfo01240 pfo01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:pfo00380 pfo00760 pfo01240 pfo01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pfo00770 pfo01240 pfo01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pfo00780 pfo01240 pfo01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pfo00780 pfo01240 pfo01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pfo00785 pfo01240 pfo01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pfo00785 pfo01240 pfo01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:pfo00785 pfo01240 pfo01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pfo00790 pfo00670 pfo01240 pfo01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:pfo00790 pfo01240 pfo01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pfo00790 pfo01240 pfo01100]
M00141 C1-unit interconversion, eukaryotes [PATH:pfo00670 pfo01240 pfo01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pfo00860 pfo01240 pfo01100 pfo01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:pfo00860 pfo01240 pfo01100 pfo01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pfo00860 pfo01240 pfo01100 pfo01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pfo00860 pfo01240 pfo01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pfo00130 pfo01240 pfo01100 pfo01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:pfo00130 pfo01240 pfo01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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