Rattus norvegicus

Scientific Name	Rattus norvegicus [TAX:10116]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
DBLINKS	KEGG GENOME: T01003

Known viruses (51)

Scientific Name	Alkhumra hemorrhagic fever virus [TAX:172148]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus kyasanurense; Kyasanur Forest disease virus
GenBank	JN860200 Alkhumra hemorrhagic fever virus strain SCVHF001, complete genome.
KEGG DISEASE	H01560 Alkhumra hemorrhagic fever
Evidence	Literature
Reference	PMID: 11554750
Authors	Charrel RN, Zaki AM, Attoui H, Fakeeh M, Billoir F, Yousef AI, de Chesse R, De Micco P, Gould EA, de Lamballerie X
Title	Complete coding sequence of the Alkhurma virus, a tick-borne flavivirus causing severe hemorrhagic fever in humans in Saudi Arabia.
Journal	Biochem Biophys Res Commun. 2001 Sep 21;287(2):455-61.
Comment	Culture cell line: Vero cells Laboratory host: house mouse, sheep, Wistar rats
Evidence	Literature
Reference	PMID: 17370534
Authors	Charrel RN, Fagbo S, Moureau G, Alqahtani MH, Temmam S, de Lamballerie X
Title	Alkhurma hemorrhagic fever virus in Ornithodoros savignyi ticks.
Journal	Emerg Infect Dis. 2007 Jan;13(1):153-5.
Comment	Culture cell line: Vero cells Laboratory host: house mouse, sheep, Wistar rats
Evidence	Literature
Reference	PMID: 28456648
Authors	Al-Tawfiq JA, Memish ZA
Title	Alkhurma hemorrhagic fever virus.
Journal	Microbes Infect. 2017 Jun;19(6):305-310.
Comment	Culture cell line: Vero cells Laboratory host: house mouse, sheep, Wistar rats
DBLINKS	KEGG GENOME: T40050

Scientific Name	Anaconda paramyxovirus [TAX:1529450]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Feraresvirinae; Ferlavirus; Ferlavirus reptilis
GenBank	KJ956407 Anaconda paramyxovirus isolate RF111111, complete genome.
Evidence	Literature
Reference	PMID: 25078906
Authors	Woo PC, Lau SK, Martelli P, Hui SW, Lau CC, Fan RY, Groff JM, Tam EW, Chan KH, Yuen KY
Title	Fatal systemic necrotizing infections associated with a novel paramyxovirus, anaconda paramyxovirus, in green anaconda juveniles.
Journal	J Clin Microbiol. 2014 Oct;52(10):3614-23.
Comment	Culture cell line: BHK21, HF, Calu-3, A549, Hep-2, Caco-2, HRT-18G, Huh-7, Hela, HEK, NT2, RD, SF268, His-1, MDCK, MDBK, RK13, 3T3, Dubca, LLC-MK2, Vero, VeroE6, CRFK, PK-15, RK3E, RMC,DF-1, C6/36 cells
DBLINKS	ViralZone: genus, family

Scientific Name	Apodemus agrarius picornavirus [TAX:2184393]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; unclassified Picornavirales
RefSeq	NC_076019 Apodemus agrarius picornavirus strain Longwan-Rn37 polyprotein (QKJ85_gp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076019 ICTV: 202307410

Scientific Name	Astrovirus MLB1 HK05 [TAX:858367]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; Mamastrovirus; Mamastrovirus 6
GenBank	HM450380 Astrovirus MLB1 HK05, complete genome.
Evidence	Literature
Reference	PMID: 20554799
Authors	Chu DK, Chin AW, Smith GJ, Chan KH, Guan Y, Peiris JS, Poon LL
Title	Detection of novel astroviruses in urban brown rats and previously known astroviruses in humans.
Journal	J Gen Virol. 2010 Oct;91(Pt 10):2457-62.
DBLINKS	ViralZone: family, genus

Scientific Name	Bastrovirus/VietNam/Rat/16715_10 [TAX:1906175]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; unclassified Astroviridae; Bastrovirus BAS-3
RefSeq	NC_032484 Bastrovirus/VietNam/Rat/16715_10 non-structural polyprotein and structural polyprotein genes, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 29644096
Authors	Yinda CK, Ghogomu SM, Conceição-Neto N, Beller L, Deboutte W, Vanhulle E, Maes P, Van Ranst M, Matthijnssens J
Title	Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code.
Journal	Virus Evol. 2018 Jan;4(1):vey008.
DBLINKS	KEGG BRITE: NC_032484 ViralZone: family

Scientific Name	Betacoronavirus HKU24 [TAX:1590370]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; China Rattus coronavirus HKU24
RefSeq	NC_026011 Betacoronavirus HKU24 strain HKU24-R05005I, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_026011 ICTV: 202306124 ViralZone: family, genus

Scientific Name	Betapolyomavirus securanorvegicus [TAX:1919247]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus
RefSeq	NC_032005 Rattus norvegicus polyomavirus 2 isolate 1014-2016-2, complete genome. NC_075121 Betapolyomavirus securanorvegicus strain PITT4, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_032005 NC_075121 ICTV: 202305906 ViralZone: family, genus

Scientific Name	cardiovirus C1 [TAX:2034827]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus; Cardiovirus C
RefSeq	NC_038305 Boone cardiovirus 1 isolate BCV-1 polyprotein gene, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 27530749
Authors	Hansen TA, Mollerup S, Nguyen NP, White NE, Coghlan M, Alquezar-Planas DE, Joshi T, Jensen RH, Fridholm H, Kjartansdóttir KR, Mourier T, Warnow T, Belsham GJ, Bunce M, Willerslev E, Nielsen LP, Vinner L, Hansen AJ
Title	High diversity of picornaviruses in rats from different continents revealed by deep sequencing.
Journal	Emerg Microbes Infect. 2016 Aug 17;5(8):e90.
DBLINKS	KEGG BRITE: NC_038305 ICTV: 202301973 ViralZone: genus, family

Scientific Name	Cowpox virus [TAX:10243]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Orthopoxvirus
RefSeq	NC_003663 Cowpox virus, complete genome.
KEGG DISEASE	H02351 Cowpox
Evidence	Literature
Reference	PMID: 19828265
Authors	Essbauer S, Pfeffer M, Meyer H
Title	Zoonotic poxviruses.
Journal	Vet Microbiol. 2010 Jan 27;140(3-4):229-36.
DBLINKS	KEGG BRITE: NC_003663 KEGG GENOME: T40359 ICTV: 202304769

Scientific Name	Foot-and-mouth disease virus C1 [TAX:12121]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Aphthovirus; Foot-and-mouth disease virus; Foot and mouth disease virus C
GenBank	AY593805 Foot-and-mouth disease virus C1 isolate c1ober iso88, complete genome.
Evidence	UniProt
DBLINKS	ICTV: 202301961 ViralZone: genus, family

Scientific Name	Foot-and-mouth disease virus O [TAX:12118]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Aphthovirus; Foot-and-mouth disease virus
RefSeq	NC_039210 Foot-and-mouth disease virus O isolate o6pirbright iso58, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_039210 ICTV: 202301961 ViralZone: genus, family

Scientific Name	Gemycircularvirus gemy-ch-rat1 [TAX:1708653]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus ratas1; Rat associated gemycircularvirus 1
RefSeq	NC_027821 Gemycircularvirus gemy-ch-rat1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_027821 ICTV: 202303587 ViralZone: family, genus

Scientific Name	Gokushovirus WZ-2015a [TAX:1758150]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; Gokushovirinae; unclassified Gokushovirinae
GenBank	KT264749 Gokushovirus WZ-2015a isolate 01Fra06, complete genome. KT264750 Gokushovirus WZ-2015a isolate 02Fra12, complete genome. KT264751 Gokushovirus WZ-2015a isolate 03Fra061, complete genome. KT264752 Gokushovirus WZ-2015a isolate 04Fra22, complete genome. KT264753 Gokushovirus WZ-2015a isolate 05Brd06, complete genome. KT264754 Gokushovirus WZ-2015a isolate 06Mk06, complete genome. KT264755 Gokushovirus WZ-2015a isolate 07Ct04, complete genome. KT264756 Gokushovirus WZ-2015a isolate 08Mky24, complete genome. KT264757 Gokushovirus WZ-2015a isolate 09Rcn03, complete genome. KT264758 Gokushovirus WZ-2015a isolate 10Mky22, complete genome. KT264759 Gokushovirus WZ-2015a isolate 11Rcn07, complete genome. KT264760 Gokushovirus WZ-2015a isolate 12Fra21, complete genome. KT264761 Gokushovirus WZ-2015a isolate 13Mky11, complete genome. KT264762 Gokushovirus WZ-2015a isolate 14Ct02, complete genome. KT264763 Gokushovirus WZ-2015a isolate 15Fra10, complete genome. KT264764 Gokushovirus WZ-2015a isolate 16IC3, complete genome. KT264765 Gokushovirus WZ-2015a isolate 17Fra18, complete genome. KT264766 Gokushovirus WZ-2015a isolate 18Fx10, complete genome. KT264767 Gokushovirus WZ-2015a isolate 19Fra14, complete genome. KT264768 Gokushovirus WZ-2015a isolate 20Rcn02, complete genome. KT264769 Gokushovirus WZ-2015a isolate 21Fx9, complete genome. KT264770 Gokushovirus WZ-2015a isolate 22Mky17, complete genome. KT264771 Gokushovirus WZ-2015a isolate 23Fra13, complete genome. KT264772 Gokushovirus WZ-2015a isolate 24Fra20, complete genome. KT264773 Gokushovirus WZ-2015a isolate 25Fra16, complete genome. KT264774 Gokushovirus WZ-2015a isolate 26Brd07, complete genome. KT264775 Gokushovirus WZ-2015a isolate 27Mky09, complete genome. KT264776 Gokushovirus WZ-2015a isolate 28Mky14, complete genome. KT264777 Gokushovirus WZ-2015a isolate 29Fx2, complete genome. KT264778 Gokushovirus WZ-2015a isolate 30Rcn04, complete genome. KT264779 Gokushovirus WZ-2015a isolate 31Fra11, complete genome. KT264780 Gokushovirus WZ-2015a isolate 32Mky02, complete genome. KT264781 Gokushovirus WZ-2015a isolate 33Mky03, complete genome. KT264782 Gokushovirus WZ-2015a isolate 34Fra04, complete genome. KT264783 Gokushovirus WZ-2015a isolate 35Fra05, complete genome. KT264784 Gokushovirus WZ-2015a isolate 36Fra03, complete genome. KT264785 Gokushovirus WZ-2015a isolate 37Mk04, complete genome. KT264786 Gokushovirus WZ-2015a isolate 38Chd443, complete genome. KT264787 Gokushovirus WZ-2015a isolate 39Rt2, complete genome. KT264788 Gokushovirus WZ-2015a isolate 40Chd434, complete genome. KT264789 Gokushovirus WZ-2015a isolate 41Mky07, complete genome. KT264790 Gokushovirus WZ-2015a isolate 42Fra01, complete genome. KT264791 Gokushovirus WZ-2015a isolate 43Fra07, complete genome. KT264792 Gokushovirus WZ-2015a isolate 44Mky08, complete genome. KT264793 Gokushovirus WZ-2015a isolate 45Mky19, complete genome. KT264794 Gokushovirus WZ-2015a isolate 46Fx8, complete genome. KT264795 Gokushovirus WZ-2015a isolate 47Fra09, complete genome. KT264796 Gokushovirus WZ-2015a isolate 48Chd478, complete genome. KT264797 Gokushovirus WZ-2015a isolate 49Fx1, complete genome. KT264798 Gokushovirus WZ-2015a isolate 50Chd433, complete genome. KT264799 Gokushovirus WZ-2015a isolate 51Fra19, complete genome. KT264800 Gokushovirus WZ-2015a isolate 52Mk03, complete genome. KT264801 Gokushovirus WZ-2015a isolate 53Rcn05, complete genome. KT264802 Gokushovirus WZ-2015a isolate 54Mky12, complete genome. KT264803 Gokushovirus WZ-2015a isolate 55Mky20, complete genome. KT264804 Gokushovirus WZ-2015a isolate 56Mky13, complete genome. KT264805 Gokushovirus WZ-2015a isolate 57Mky16, complete genome. KT264806 Gokushovirus WZ-2015a isolate 58Brd09, complete genome. KT264807 Gokushovirus WZ-2015a isolate 59Mky06, complete genome. KT264808 Gokushovirus WZ-2015a isolate 60Brd01, complete genome. KT264809 Gokushovirus WZ-2015a isolate 61Brd11, complete genome. KT264810 Gokushovirus WZ-2015a isolate 62Brd02, complete genome. KT264811 Gokushovirus WZ-2015a isolate 63CrownNew1, complete genome. KT264812 Gokushovirus WZ-2015a isolate 64Brd03, complete genome. KT264813 Gokushovirus WZ-2015a isolate 65Brd05, complete genome. KT264814 Gokushovirus WZ-2015a isolate 66Brd04, complete genome. KT264815 Gokushovirus WZ-2015a isolate 67IC2, complete genome. KT264816 Gokushovirus WZ-2015a isolate 68Fx3, complete genome. KT264817 Gokushovirus WZ-2015a isolate 69Rcn08, complete genome. KT264818 Gokushovirus WZ-2015a isolate 70Chd477, complete genome. KT264819 Gokushovirus WZ-2015a isolate 71Chd502-1, complete genome. KT264820 Gokushovirus WZ-2015a isolate 72Mk01, complete genome. KT264821 Gokushovirus WZ-2015a isolate 73Mky18, complete genome. KT264822 Gokushovirus WZ-2015a isolate 74Chd23, complete genome. KT264823 Gokushovirus WZ-2015a isolate 75Mky05, complete genome. KT264824 Gokushovirus WZ-2015a isolate 76Mky15, complete genome. KT264825 Gokushovirus WZ-2015a isolate 77Fx5, complete genome. KT264826 Gokushovirus WZ-2015a isolate 78Fra08, complete genome. KT264827 Gokushovirus WZ-2015a isolate 79Mky01, complete genome. KT264828 Gokushovirus WZ-2015a isolate 80ct01, complete genome. KT264829 Gokushovirus WZ-2015a isolate 81Fra17, complete genome. KT264830 Gokushovirus WZ-2015a isolate 82Fx7, complete genome. KT264831 Gokushovirus WZ-2015a isolate 83Mk07, complete genome. KT264832 Gokushovirus WZ-2015a isolate 84Fx6, complete genome. KT264833 Gokushovirus WZ-2015a isolate 85Mky10, complete genome. KT264834 Gokushovirus WZ-2015a isolate 86Rcn01, complete genome. KT264835 Gokushovirus WZ-2015a isolate 87Rt1, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Hepatitis E virus rat/R63/DEU/2009 [TAX:879096]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Rocahepevirus; Rocahepevirus ratti
RefSeq	NC_038504 Hepatitis E virus rat/R63/DEU/2009, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038504 ICTV: 202303667

Scientific Name	Hepatitis E virus rat/R68/DEU/2009 [TAX:879095]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Paslahepevirus; Paslahepevirus balayani; Hepatitis E virus type rat
GenBank	GU345043 Hepatitis E virus rat/R68/DEU/2009, complete genome.
Evidence	GenBank

Scientific Name	Human mastadenovirus D [TAX:130310]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus
RefSeq	AC_000006 Human adenovirus D, complete genome.
KEGG DISEASE	H01320 Epidemic keratoconjunctivitis
Evidence	Literature
Reference	PMID: 9971839
Authors	Chillon M, Bosch A, Zabner J, Law L, Armentano D, Welsh MJ, Davidson BL
Title	Group D adenoviruses infect primary central nervous system cells more efficiently than those from group C.
Journal	J Virol. 1999 Mar;73(3):2537-40.
Comment	Culture cell line: HUVEC cells, Fetal rat CNS cells
DBLINKS	KEGG BRITE: AC_000006 KEGG GENOME: T40102

Scientific Name	hunnivirus A4 [TAX:1562064]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Hunnivirus; Hunnivirus A
RefSeq	NC_025675 Norway rat hunnivirus isolate NrHuV/NYC-E21 polyprotein gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025675 ICTV: 202302013 ViralZone: genus, family

Scientific Name	Lucheng Rn rat coronavirus [TAX:1508224]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Luchacovirus
RefSeq	NC_032730 Lucheng Rn rat coronavirus isolate Lucheng-19, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_032730 ICTV: 202306122 ViralZone: genus, family

Scientific Name	Lyssavirus rabies [TAX:11292]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Lyssavirus
RefSeq	NC_001542 Rabies virus, complete genome.
KEGG DISEASE	H00377 Rabies
Evidence	Literature
Reference	PMID: 24911887
Authors	Wang L, Tang Q, Liang G
Title	Rabies and rabies virus in wildlife in mainland China, 1990-2013.
Journal	Int J Infect Dis. 2014 Aug;25:122-9.
DBLINKS	KEGG BRITE: NC_001542 KEGG GENOME: T40022 ICTV: 202301733 ViralZone: genus, family

Scientific Name	Mammarenavirus wenzhouense [TAX:3052330]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus
RefSeq	NC_026018 Wenzhou virus isolate Rn-242 segment S, complete sequence. NC_026019 Wenzhou virus isolate Rn-242 segment L, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_026018 NC_026019 ICTV: 202302601 ViralZone: genus, family

Scientific Name	Murid betaherpesvirus 8 [TAX:1261657]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Betaherpesvirinae; Muromegalovirus; Muromegalovirus muridbeta8
RefSeq	NC_019559 Murid herpesvirus 8 isolate England, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_019559 ICTV: 202301470 ViralZone: family, genus

Scientific Name	Murine coronavirus [TAX:694005]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus
GenBank	JX169867 Murine coronavirus strain JHM.WU, complete genome.
Evidence	Literature
Reference	PMID: 25589656
Authors	Zhang R, Li Y, Cowley TJ, Steinbrenner AD, Phillips JM, Yount BL, Baric RS, Weiss SR
Title	The nsp1, nsp13, and M proteins contribute to the hepatotropism of murine coronavirus JHM.WU.
Journal	J Virol. 2015 Apr;89(7):3598-609.
Comment	Culture cell line: 17Cl-1 (mouse), L2 (rat fibroblast cells) and baby hamster kidney cells
DBLINKS	ViralZone: family, genus

Scientific Name	Murine leukemia virus [TAX:11786]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus
GenBank	AB187566 Murine leukemia virus Graffi GV-1.4 DNA, complete genome.
Evidence	Literature
Reference	PMID: 8392610
Authors	Ru M, Shustik C, Rassart E
Title	Graffi murine leukemia virus: molecular cloning and characterization of the myeloid leukemia-inducing agent.
Journal	J Virol. 1993 Aug;67(8):4722-31.
Comment	Culture cell line: NIH 3T3, BALB/c (mouse fibroblast cells) and ratXC, Rat-1 (Rat fibroblast cells)
DBLINKS	ViralZone: family, genus

Scientific Name	Norway rat hepacivirus 1 [TAX:1562038]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Hepacivirus; Hepacivirus ratti
RefSeq	NC_025672 Norway rat hepacivirus 1, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025672 ICTV: 202303131

Scientific Name	Norway rat hepacivirus 2 [TAX:1562039]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Hepacivirus; Hepacivirus norvegici
RefSeq	NC_025673 Norway rat hepacivirus 2, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025673 ICTV: 202303132

Scientific Name	Norway rat pegivirus [TAX:1562065]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pegivirus; unclassified Pegivirus
RefSeq	NC_025679 Norway rat pegivirus isolate NrPgV/NYC-E13 polyprotein gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025679

Scientific Name	Norway rat pestivirus [TAX:1562066]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pestivirus; unclassified Pestivirus
RefSeq	NC_025677 Norway rat pestivirus isolate NrPV/NYC-D23 polyprotein gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025677 ICTV: 202305785

Scientific Name	Orthohantavirus hantanense [TAX:3052480]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus
RefSeq	NC_005218 Hantaan virus, complete genome. NC_005219 Hantaan virus, complete genome. NC_005222 Hantaan virus segment L, complete genome.
KEGG DISEASE	H00389 Hemorrhagic fever with renal syndrome
Evidence	Literature
Reference	PMID: 6127366
Authors	Lee HW, Baek LJ, Johnson KM
Title	Isolation of Hantaan virus, the etiologic agent of Korean hemorrhagic fever, from wild urban rats.
Journal	J Infect Dis. 1982 Nov;146(5):638-44.
Comment	Culture cell line: A549 cells
DBLINKS	KEGG BRITE: NC_005218 NC_005219 NC_005222 KEGG GENOME: T40016 ICTV: 202300037 ViralZone: family, genus

Scientific Name	Orthohantavirus seoulense [TAX:3052498]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus
RefSeq	NC_005236 Seoul virus strain 80-39 segment S, complete sequence. NC_005237 Seoul virus segment M, complete sequence. NC_005238 Seoul virus strain Seoul 80-39 clone 1.
KEGG DISEASE	H00389 Hemorrhagic fever with renal syndrome
Evidence	Literature
Reference	PMID: 1867009
Authors	Antic D, Lim BU, Kang CY
Title	Molecular characterization of the M genomic segment of the Seoul 80-39 virus; nucleotide and amino acid sequence comparisons with other hantaviruses reveal the evolutionary pathway.
Journal	Virus Res. 1991 Mar;19(1):47-58.
Comment	Culture cell line: Vero E6 cells
Evidence	Literature
Reference	PMID: 15744561
Authors	Schmidt J, Jandrig B, Klempa B, Yoshimatsu K, Arikawa J, Meisel H, Niedrig M, Pitra C, Krüger DH, Ulrich R
Title	Nucleocapsid protein of cell culture-adapted Seoul virus strain 80-39: analysis of its encoding sequence, expression in yeast and immuno-reactivity.
Journal	Virus Genes. 2005 Jan;30(1):37-48.
Comment	Culture cell line: Vero E6 cells
DBLINKS	KEGG BRITE: NC_005236 NC_005237 NC_005238 KEGG GENOME: T40017 ICTV: 202300056 ViralZone: family, genus

Scientific Name	rabovirus A1 [TAX:2773293]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Rabovirus; Rabovirus A
RefSeq	NC_026314 Rabovirus A1 isolate Berlin/Jan2011/0572, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26168710
Authors	Ng TF, Sachsenröder J, Reuter G, Knowles NJ, Delwart E, Johne R
Title	Rabovirus: a proposed new picornavirus genus that is phylogenetically basal to enteroviruses and sapeloviruses.
Journal	Arch Virol. 2015 Oct;160(10):2569-75.
DBLINKS	KEGG BRITE: NC_026314 ICTV: 202302049 ViralZone: genus, family

Scientific Name	Rasavirus sp. [TAX:1930508]
Lineage	Viruses; unclassified viruses
RefSeq	NC_032479 Rasavirus sp. isolate 16715_52_2, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_032479

Scientific Name	Rat associated porprismacovirus 1 [TAX:2170126]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus
RefSeq	NC_027777 Rat associated porprismacovirus 1 isolate KS/11/0577, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_027777 ICTV: 202305987 ViralZone: family

Scientific Name	Rat bocavirus [TAX:1788315]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Bocaparvovirus; Bocaparvovirus rodent1
RefSeq	NC_029133 Rat bocavirus strain HK1S, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_029133 ICTV: 202307348 ViralZone: genus, family

Scientific Name	Rat bufavirus SY-2015 [TAX:1763507]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; Protoparvovirus rodent3
RefSeq	NC_028650 Rat bufavirus SY-2015 isolate 791102, partial genome.
DBLINKS	KEGG BRITE: NC_028650 ICTV: 202305902 ViralZone: genus, family

Scientific Name	Rat coronavirus [TAX:31632]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus
GenBank	JF792616 Rat coronavirus isolate 681, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family, genus

Scientific Name	Rat coronavirus Parker [TAX:502102]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; Rat coronavirus
RefSeq	NC_012936 Rat coronavirus Parker, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_012936 ViralZone: family, genus

Scientific Name	Rat minute virus [TAX:1299922]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; unclassified Protoparvovirus
GenBank	JX645345 Rat minute virus isolate NTU2, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: genus, family

Scientific Name	Rat parvovirus 1 [TAX:74581]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; Protoparvovirus rodent2
RefSeq	NC_038545 Rat parvovirus 1a nonstructural protein (NS1) and nonstructural protein (NS2) genes, complete cds.
Evidence	Literature
Reference	PMID: 9525656
Authors	Ball-Goodrich LJ, Leland SE, Johnson EA, Paturzo FX, Jacoby RO
Title	Rat parvovirus type 1: the prototype for a new rodent parvovirus serogroup.
Journal	J Virol. 1998 Apr;72(4):3289-99.
Comment	Fischer 344
DBLINKS	KEGG BRITE: NC_038545 ICTV: 202304276 ViralZone: genus, family

Scientific Name	Rat parvovirus 2 [TAX:1885571]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae; Chaphamaparvovirus; Chaphamaparvovirus rodent2
RefSeq	NC_055465 Rat parvovirus 2 isolate 9 non-structural protein 1 (NS1) and capsid protein 1 (VP1) genes, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 27473724
Authors	Yang S, Liu Z, Wang Y, Li W, Fu X, Lin Y, Shen Q, Wang X, Wang H, Zhang W
Title	A novel rodent Chapparvovirus in feces of wild rats.
Journal	Virol J. 2016 Jul 29;13:133.
DBLINKS	KEGG BRITE: NC_055465 ICTV: 202307330 ViralZone: family

Scientific Name	Rat parvovirus NTU1 [TAX:1248250]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; unclassified Protoparvovirus
GenBank	JX827169 Rat parvovirus NTU1, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: genus, family

Scientific Name	Rat theilovirus 1 [TAX:529419]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus; Cardiovirus B; Theilovirus
GenBank	EU815052 Rat theilovirus 1, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: genus, family

Scientific Name	Rattus norvegicus papillomavirus 1 [TAX:664730]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Pipapillomavirus; Pipapillomavirus 2
GenBank	GQ180114 Rattus norvegicus papillomavirus 1 EES-2009, complete genome.
Evidence	GenBank
Evidence	UniProt
DBLINKS	ICTV: 202304106 ViralZone: family, genus

Scientific Name	Rattus norvegicus papillomavirus 3 [TAX:1756445]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Iotapapillomavirus; Iotapapillomavirus 1
RefSeq	NC_028492 Rattus norvegicus papillomavirus 3 isolate Rat_60S, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_028492 ICTV: 202304082 ViralZone: family, genus

Scientific Name	Rattus norvegicus polyomavirus 1 [TAX:1679933]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus; Alphapolyomavirus ranorvegicus
RefSeq	NC_027531 Rattus norvegicus polyomavirus 1 isolate 3690, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_027531 ICTV: 202304447 ViralZone: genus, family

Scientific Name	Respirovirus muris [TAX:3052731]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Feraresvirinae; Respirovirus
RefSeq	NC_001552 Sendai virus genomic RNA, antisense, complete sequence. NC_075392 Sendai virus genomic RNA, complete genome, strain:Nagoya.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001552 NC_075392 ICTV: 202301624 ViralZone: genus, family

Scientific Name	Rodent astrovirus [TAX:1914442]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; Mamastrovirus; unclassified Mamastrovirus
RefSeq	NC_036583 Rodent astrovirus isolate GX-006, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_036583 ViralZone: family, genus

Scientific Name	Rodent papillomavirus [TAX:2050020]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; non-primate mammal papillomaviruses
RefSeq	NC_040604 Rodent papillomavirus isolate RtRn-PV/GD2014, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040604 ViralZone: family

Scientific Name	Rodent Torque teno virus 2 [TAX:1514665]
Lineage	Viruses; Anelloviridae; unclassified Anelloviridae
RefSeq	NC_025966 Rodent Torque teno virus 2 isolate RN_2_Se15, complete genome. NC_076139 Rodent Torque teno virus 2 isolate AS_WM1_Se_4, complete genome. NC_076141 Rodent Torque teno virus 2 isolate RN_8_Se11, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025966 NC_076139 NC_076141 ICTV: 202309480, 202309481

Scientific Name	Rosavirus B [TAX:1902501]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Rosavirus
RefSeq	NC_031105 Rosavirus B strain RNCW0602091R polyprotein gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_031105 ICTV: 202306477 ViralZone: genus, family

Scientific Name	Seoul virus 80-39 [TAX:12557]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus; Orthohantavirus seoulense
GenBank	S47716 Seoul virus 80-39 glycoprotein precusor gene, complete cds. X56492 Seoul virus 80-39 L gene for RNA-dependent RNA polymerase, genomic RNA.
Evidence	UniProt
DBLINKS	ViralZone: family, genus

Scientific Name	Theiler's-like virus of rats [TAX:204729]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus; Cardiovirus B; Theilovirus
GenBank	AB090161 Theiler's-like virus of rats NGS910 genomic RNA, complete genome.
Evidence	Literature
Reference	PMID: 12784854
Authors	Ohsawa K, Watanabe Y, Miyata H, Sato H
Title	Genetic analysis of a Theiler-like virus isolated from rats.
Journal	Comp Med. 2003 Apr;53(2):191-6.
DBLINKS	ICTV: 202301972 ViralZone: genus, family