Clostridioides difficile

Clostridioides difficile

Scientific Name	Clostridioides difficile [TAX:1496]
Lineage	cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
DBLINKS	KEGG GENOME: T03785

Known viruses (25)

Scientific Name	Clostridioides phage AR1074-1 [TAX:3068252]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	OR397123 Clostridioides phage AR1074-1, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage AR1075-1 [TAX:3038264]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Leicestervirus; unclassified Leicestervirus
GenBank	OQ703261 Clostridioides phage AR1075-1, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage AR1086-1 [TAX:3068253]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	OR397124 Clostridioides phage AR1086-1, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage CD1801 [TAX:2803369]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	MW512570 Clostridioides phage CD1801, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage CD2301 [TAX:2814699]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Sherbrookevirus; unclassified Sherbrookevirus
GenBank	MW512571 Clostridioides phage CD2301, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage Hain-Saunders-2022a [TAX:2998861]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Leicestervirus; unclassified Leicestervirus
GenBank	CP103806 Clostridioides phage Hain-Saunders-2022a, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage HGP05 [TAX:2976353]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	CP103976 Clostridioides phage HGP05, complete sequence.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage JD033 [TAX:2723766]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Sherbrookevirus; unclassified Sherbrookevirus
GenBank	MT193276 Clostridioides phage JD033, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage LIBA2945 [TAX:2069615]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	MF547663 Clostridioides phage LIBA2945, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage LIBA6276 [TAX:2069614]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	MF547662 Clostridioides phage LIBA6276, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage phiCD08011 [TAX:2814700]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Sherbrookevirus; unclassified Sherbrookevirus
GenBank	MW512572 Clostridioides phage phiCD08011, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage phiCD27 [TAX:2849704]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Colneyvirus; Colneyvirus CD27
RefSeq	NC_011398 Clostridioides phage phiCD27, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_011398 ICTV: 202300422 ViralZone: class, class, class

Scientific Name	Clostridioides phage phiCD418 [TAX:2814701]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	MW512573 Clostridioides phage phiCD418, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridioides phage phiCDKH02 [TAX:3145026]
Lineage	Viruses; unclassified bacterial viruses
GenBank	PP767789 Clostridioides phage phiCDKH02, complete genome.
Evidence	GenBank

Scientific Name	Clostridioides phage phiSemix9P1 [TAX:1971232]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	KX905163 Clostridioides phage phiSemix9P1, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridium phage CDKM15 [TAX:1868595]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Colneyvirus; Colneyvirus CDKM15
RefSeq	NC_048643 Clostridium phage CDKM15, complete genome.
Evidence	Literature
Reference	PMID: 27854339
Authors	Rashid SJ, Barylski J, Hargreaves KR, Millard AA, Vinner GK, Clokie MR
Title	Two Novel Myoviruses from the North of Iraq Reveal Insights into Clostridium difficile Phage Diversity and Biology.
Journal	Viruses. 2016 Nov 16;8(11).
DBLINKS	KEGG BRITE: NC_048643 ICTV: 202309888 ViralZone: class, class, class

Scientific Name	Clostridium phage CDKM9 [TAX:1868594]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Colneyvirus; Colneyvirus CDKM9
RefSeq	NC_048642 Clostridium phage CDKM9, complete genome.
Evidence	Literature
Reference	PMID: 27854339
Authors	Rashid SJ, Barylski J, Hargreaves KR, Millard AA, Vinner GK, Clokie MR
Title	Two Novel Myoviruses from the North of Iraq Reveal Insights into Clostridium difficile Phage Diversity and Biology.
Journal	Viruses. 2016 Nov 16;8(11).
DBLINKS	KEGG BRITE: NC_048642 ICTV: 202309885 ViralZone: class, class, class

Scientific Name	Clostridium phage CDMH1 [TAX:1411095]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Yongloolinvirus; Yongloolinvirus CDMH1
RefSeq	NC_024144 Clostridium phage CDMH1 complete genome.
Evidence	Literature
Reference	PMID: 24475037
Authors	Hargreaves KR, Kropinski AM, Clokie MR
Title	What does the talking?: quorum sensing signalling genes discovered in a bacteriophage genome.
Journal	PLoS One. 2014;9(1):e85131.
Comment	Clostridium difficile
DBLINKS	KEGG BRITE: NC_024144 ICTV: 202309883 ViralZone: class, class, class

Scientific Name	Clostridium phage JD032 [TAX:2530171]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Sherbrookevirus; unclassified Sherbrookevirus
GenBank	MK473382 Clostridium phage JD032, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Clostridium phage phi CD119 [TAX:2883936]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Lubbockvirus; Lubbockvirus CD119
RefSeq	NC_007917 Clostridium phage phi CD119, complete genome.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 16547044
Authors	Govind R, Fralick JA, Rolfe RD
Title	Genomic organization and molecular characterization of Clostridium difficile bacteriophage PhiCD119.
Journal	J Bacteriol. 2006 Apr;188(7):2568-77.
DBLINKS	KEGG BRITE: NC_007917 ICTV: 202300423 ViralZone: genus, class, class, class

Scientific Name	Clostridium phage phiCD211 [TAX:1582152]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
RefSeq	NC_029048 Clostridium phage phiCD211, complete genome.
DBLINKS	KEGG BRITE: NC_029048 ViralZone: class, class, class

Scientific Name	Clostridium phage phiCD6356 [TAX:864178]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
RefSeq	NC_015262 Clostridium phage phiCD6356, complete genome.
DBLINKS	KEGG BRITE: NC_015262 ViralZone: class, class, class

Scientific Name	Clostridium phage phiCDHM11 [TAX:1445553]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Sherbrookevirus; Sherbrookevirus CDHM11
RefSeq	NC_029001 Clostridium phage phiCDHM11 complete genome.
Evidence	Literature
Reference	PMID: 26008700
Authors	Hargreaves KR, Clokie MR
Title	A Taxonomic Review of Clostridium difficile Phages and Proposal of a Novel Genus, "Phimmp04likevirus".
Journal	Viruses. 2015 May 21;7(5):2534-41.
DBLINKS	KEGG BRITE: NC_029001 ICTV: 202309895 ViralZone: class, class, class

Scientific Name	Clostridium phage phiCDKH01 [TAX:2686203]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	MN718463 Clostridium phage phiCDKH01, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Peptoclostridium phage phiCDIF1296T [TAX:1677909]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	CP011970 Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class